PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g017490.1
Common NameMTR_1g017490
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRF
Protein Properties Length: 654aa    MW: 70743.6 Da    PI: 7.5497
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g017490.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.52.7e-24213257145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e 
  Medtr1g017490.1 213 DPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEG 257
                      79****************************************985 PP
2QLQ59.21.2e-20143179137
              QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                      ++FT++Q+++L++Q+l+yKy+ an+ vP++Ll +i+k
  Medtr1g017490.1 143 GPFTPSQWMELEHQALIYKYITANVAVPHHLLIPIRK 179
                      59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.6E-12143179IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.0E-15144178IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.226144179IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.847213257IPR014977WRC domain
PfamPF088791.3E-20214256IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MDLGVVSLEG LVSSDPESKN KWYNNNGSGL LKQERSGTCT EDELRSFKLA KTDQQVHQRN  60
SCSASLLRSN ATTTLFSSDG QHQQQQMLSF STPTSKSESF LVDKTTQNAA LSYAASYHPM  120
SSYNRNTGYS SGSMHGGLSG VRGPFTPSQW MELEHQALIY KYITANVAVP HHLLIPIRKA  180
LDSAGLSSFS TALLRPNALG WGGFHLGYSN NTDPEPGRCR RTDGKKWRCS RDAVVDQKYC  240
ERHMNRGRHR SRKPVEGQSG QALTTGGTTN TATTTTSTIT PSGSSKQINS AAASPSSSIV  300
VPGGNTVSNT LSFAHQEHSK NMNSLIGQDN GSSAANTINR MFMNNKENNN TSETMQDGPA  360
LPMLPPTLEL KPKENQPFMI QKQHISYDES SRNNEFGFVT SDSLLNPSQK TSTLLGTRTF  420
GSSSQNPTNR DAGSQQSLRH FIDDFPKPHS DHQHHNRSGG FSWPELDMQS DRTQLSISTP  480
MTSSDFMSFT SSATNEKLTL SPLRLSREID PIQMGLGVGS SALNNNNESS NNNTTKQANW  540
IPITWESSMG GPLGEVLHLS NTITYNANDD HYGSGNNNSS ALNLMTDGWD NHNSPPMGSS  600
PTGVLQKTAF GSLSNSSAGS SPRAENNKTT QEGASLCNDL LGSTLGNNTS FTP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g017490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150367e-61AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465961.10.0growth-regulating factor 1
TrEMBLA0A072VEY40.0A0A072VEY4_MEDTR; Growth-regulating factor
STRINGXP_004498953.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.12e-61growth-regulating factor 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]