PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g017080.1
Common NameMTR_1g017080
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TALE
Protein Properties Length: 380aa    MW: 43695.7 Da    PI: 6.8941
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g017080.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.23.1e-093063412055
                      HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Medtr1g017080.1 306 YKWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 341
                      4679*****************************885 PP
2ELK361.5e-12261282122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK++Ll+KYsgyL+sLkqE+s
  Medtr1g017080.1 261 ELKNHLLKKYSGYLSSLKQELS 282
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.6E-21117161IPR005540KNOX1
PfamPF037904.7E-22118160IPR005540KNOX1
SMARTSM012563.7E-30168219IPR005541KNOX2
PfamPF037916.5E-25172218IPR005541KNOX2
SMARTSM011881.0E-6261282IPR005539ELK domain
PfamPF037897.5E-10261282IPR005539ELK domain
PROSITE profilePS5121311.243261281IPR005539ELK domain
PROSITE profilePS5007113.119281344IPR001356Homeobox domain
SuperFamilySSF466896.42E-20282356IPR009057Homeodomain-like
SMARTSM003891.8E-13283348IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-27286347IPR009057Homeodomain-like
CDDcd000867.38E-12293345No hitNo description
PfamPF059201.1E-16301340IPR008422Homeobox KN domain
PROSITE patternPS000270319342IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MEEYTNNPNP NPNSRPNFLY SIASGNNQHQ HQHNHQHNQI PMNNFHGSDN CFQSDQVQHQ  60
QHSAVKTEAN STSQLHTPIF HYPALMRTNI IPHTNIMHNH HHQGGGGSPS SSNVEAEAIK  120
AKIIAHPQYS SLLQAYMDCQ KIGAPPEVVA RLVASRQEFE ARQRSSVNSR ETSKDPELDQ  180
FMEAYYDMLV KYREELTRPI QEAMDFMRRI ETQLNTLCNG PLRIFPDDKN EGVGSSEEDQ  240
ENSGGETDQL PEIDPRAEDR ELKNHLLKKY SGYLSSLKQE LSKKKKKGKL PKEARQKLLN  300
WWELHYKWPY PSESEKVALA ESTGLDQKQI NNWFINQRKR HWKPSEDMQF MVMDGLHPQS  360
AALYMDGHYM ADGPYRLGP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.71820.0leaf| root| seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the apical meristems, in the newly emerged lateral primordia in the floral bud, in their vascular bundles and in the cortex parenchyma of the floral pedicle. Also present in the lateral tips of leaf primordia.
UniprotTISSUE SPECIFICITY: Expressed only in the stems.
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g017080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1280570.0EF128057.1 Medicago truncatula class I KNOX homeobox transcription factor (KNOX2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465932.10.0homeotic protein knotted-1
SwissprotO041351e-163KNAP2_MALDO; Homeobox protein knotted-1-like 2
SwissprotQ413301e-164KN1_SOLLC; Homeotic protein knotted-1
TrEMBLX2D3150.0X2D315_MEDTR; BP
STRINGXP_004498934.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-132KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]