PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g017000.1
Common NameMTR_1g017000
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 253aa    MW: 28048.6 Da    PI: 6.6678
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g017000.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-131462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+++Ed  l+ + + +G+  +W + +++ g++R++k+c++rw++yl
  Medtr1g017000.1 14 RGPWSPDEDATLKSYLATHGTVgNWIALPKKAGLKRCGKSCRLRWLNYL 62
                     89******************879************************97 PP
2Myb_DNA-binding46.21e-1469111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd ++  +  q+G++ W++Ia++++ gRt++++k++w++
  Medtr1g017000.1  69 GGFTEEEDAIIFTLYSQMGSR-WSAIASKLP-GRTDNDVKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.687962IPR017930Myb domain
SuperFamilySSF466893.87E-2612109IPR009057Homeodomain-like
SMARTSM007173.1E-101364IPR001005SANT/Myb domain
PfamPF002496.7E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-241569IPR009057Homeodomain-like
CDDcd001673.93E-81662No hitNo description
PROSITE profilePS5129423.03863117IPR017930Myb domain
SMARTSM007179.2E-1567115IPR001005SANT/Myb domain
PfamPF002495.9E-1369111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2470117IPR009057Homeodomain-like
CDDcd001673.43E-1271113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGRAPCCDKE KVKRGPWSPD EDATLKSYLA THGTVGNWIA LPKKAGLKRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDAIIF TLYSQMGSRW SAIASKLPGR TDNDVKNYWN TKLKKKILTG  120
IVKLKPMTEN DNTIPSTPSL TQSSNPQNSE INFPASQNQH SPPSPLPNML DNKVDKIHDA  180
VVSEIGTSNK SIINPLVSIS QDSSSIAIQD QAGDESMESF MDFGFGFPHD DVNDLNCFPE  240
WVDFSYADIK PN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26141197110B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In roots, expressed in endodermal cells from the late elongation zones to the differentiation zone and, to a lower extent, in endodermal cells of the meristematic zone. {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
UniprotTISSUE SPECIFICITY: Expressed in leaves, roots (endodermis-specific) and seedlings. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322, ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g017000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465930.10.0transcription factor MYB36
SwissprotQ9FKL21e-66MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A072VEE80.0A0A072VEE8_MEDTR; Myb transcription factor
STRINGXP_004498932.11e-119(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.19e-69myb domain protein 36
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]