PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g014820.1 | ||||||||
Common Name | MTR_1g014820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 266aa MW: 30403 Da PI: 4.105 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.5 | 6.9e-18 | 27 | 75 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr +k +g+Wv+eIr p++ r r++lg+++t e+Aa+a +aa +l+g Medtr1g014820.1 27 YRGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTQEKAARAFDAALYCLRG 75 9****999.**********933...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.01E-20 | 26 | 83 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-29 | 26 | 84 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.352 | 26 | 83 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-30 | 26 | 89 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.8E-11 | 27 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-10 | 27 | 38 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.16E-29 | 27 | 85 | No hit | No description |
PRINTS | PR00367 | 7.3E-10 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MTSSNPTSSI NVTTTDHNPN SSNDKMYRGV RKRKWGKWVS EIRLPNSRER IWLGSYDTQE 60 KAARAFDAAL YCLRGPHASF NFPNTPFTIN VAFHGYQSLS PQEIQEVAAK YANESPPIEL 120 TQEQDHQVSS ESQNDATNSN NSYSCSLSDN DGREQVDYGD LRMMDWTFKD MFVEMNGVAN 180 CFELFYGLEN DTNSNAYSYP LDNDIGDLRT MDWTFEDMNG VVNDSDFYGL QNMQCSTQLF 240 EEDNVDQIEC EDAFSNHSIL WSWNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-15 | 27 | 84 | 15 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g014820.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013465861.2 | 0.0 | ethylene-responsive transcription factor ERF018 | ||||
Swissprot | Q9S7L5 | 1e-40 | ERF18_ARATH; Ethylene-responsive transcription factor ERF018 | ||||
TrEMBL | A0A072VDN9 | 0.0 | A0A072VDN9_MEDTR; Ethylene-responsive transcription factor ERF018 | ||||
TrEMBL | A0A396JK40 | 0.0 | A0A396JK40_MEDTR; Putative transcription factor AP2-EREBP family | ||||
STRING | XP_004498968.1 | 1e-88 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1479 | 33 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74930.1 | 5e-43 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g014820.1 |
Entrez Gene | 25481980 |
Publications ? help Back to Top | |||
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