PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g014800.1
Common NameMTR_1g014800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 220aa    MW: 25447 Da    PI: 4.6242
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g014800.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.5e-183179355
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ykGVr +k +g+Wv+eIr p++   r r++lg+++t e+Aa+a +aa  +l+g
  Medtr1g014800.1 31 YKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTQEKAARAFDAALYCLRG 79
                     9****999.**********933...5*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.8E-303093IPR001471AP2/ERF domain
PROSITE profilePS5103222.1153087IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-203087IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.4E-293088IPR001471AP2/ERF domain
PfamPF008473.7E-113179IPR001471AP2/ERF domain
PRINTSPR003671.8E-93142IPR001471AP2/ERF domain
CDDcd000187.86E-293189No hitNo description
PRINTSPR003671.8E-95369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MTCSNPTSSI NVTTNDHNTP CSNNKPLDKM YKGVRKRKWG KWVSEIRLPN SRERIWLGSY  60
DTQEKAARAF DAALYCLRGP HASFNFPNTP LTINLVFHHS VSHNSLSPQE IQEIAAKFAN  120
ELPIELTQEE DQQVPSESQN DANSNSYSYP LDNDIGDLRR MDWRFEDMFD DMNRVANCSN  180
FYGLQNMQYS TQLFEEDNVD QIECEDTFSN HSILWNWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1531881573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13137KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g014800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465860.11e-165ethylene-responsive transcription factor ERF018
SwissprotQ9S7L55e-42ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLA0A396JFR71e-164A0A396JFR7_MEDTR; Putative transcription factor AP2-EREBP family
STRINGXP_004498968.18e-92(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.12e-44ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  5. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]