PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g013450.1
Common NameMTR_1g013450
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family CO-like
Protein Properties Length: 317aa    MW: 35496.5 Da    PI: 6.7781
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g013450.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.12.1e-09546539
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                      C+ +++ +++lfC++++ +lC +C +++H         H+v
  Medtr1g013450.1  5 LCDSCKSTKATLFCRSDSAFLCLTCDSNIHAAnklasrhHRV 46
                     7******99*********************667888885544 PP
2zf-B_box23.71e-074691342
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      + C+ +e+ +++  C+ +   lC +C   +H+       H++vpl
  Medtr1g013450.1 46 VTLCQVCEQAPAHVTCKADAAVLCISCDHDIHSAnplarrHERVPL 91
                     678*****************************66899999*99986 PP
3CCT70.63.9e-24255298144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+++RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  Medtr1g013450.1 255 REARVMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRS 298
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003369.5E-14148IPR000315B-box-type zinc finger
PROSITE profilePS5011911.291148IPR000315B-box-type zinc finger
CDDcd000217.96E-9548No hitNo description
PfamPF006432.6E-6546IPR000315B-box-type zinc finger
PROSITE profilePS5011910.854491IPR000315B-box-type zinc finger
PfamPF006436.3E-64691IPR000315B-box-type zinc finger
CDDcd000216.11E-74791No hitNo description
SMARTSM003361.8E-74991IPR000315B-box-type zinc finger
PfamPF062035.7E-18255297IPR010402CCT domain
PROSITE profilePS5101716.906255297IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MATKLCDSCK STKATLFCRS DSAFLCLTCD SNIHAANKLA SRHHRVTLCQ VCEQAPAHVT  60
CKADAAVLCI SCDHDIHSAN PLARRHERVP LTTTFNHQNS QQQSFFSEND HDATTEEAEA  120
ASWLLQTPSN PKFPDLNYSH YSYPEIDDFV TVNTKTDLPE QNSPGTTADG VVPVQSHSKT  180
ATEHEHEHYS DINIDFSNSK PFTYNFNHTV SSPSMDVGVV PDGNVMTEIS YCSYQTTATE  240
TAPMTVAVPM TAVEREARVM RYREKRKNRR FEKTIRYASR KAYAETRPRI KGRFAKRSDL  300
NMNLIAEDEY GVVPSC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.70210.0flower| leaf| seed| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g013450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6616820.0DQ661682.1 Medicago sativa cultivar WL323 CONSTANS-like 1 (COL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003588808.10.0zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T95e-94COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLG7I7K70.0G7I7K7_MEDTR; Putative transcription factor C2C2-CO-like family
STRINGAES590590.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.11e-89CONSTANS-like 3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]