PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g012960.1
Common NameMTR_1g012960
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TALE
Protein Properties Length: 440aa    MW: 49415.5 Da    PI: 5.2873
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g012960.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41e-073854182154
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      k +yp++e++++L +++gL+ +q+ +WF N+R +
  Medtr1g012960.1 385 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 418
                      469*****************************87 PP
2ELK27.57.2e-10339360122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELKh+L+++Y+++++++++E++
  Medtr1g012960.1 339 ELKHELKHGYKEKIVDIREEIL 360
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.7E-20171215IPR005540KNOX1
PfamPF037902.0E-18174214IPR005540KNOX1
SMARTSM012561.8E-27226281IPR005541KNOX2
PfamPF037911.7E-20232280IPR005541KNOX2
SMARTSM011880.0023339360IPR005539ELK domain
PfamPF037893.4E-5339360IPR005539ELK domain
PROSITE profilePS512139.551339359IPR005539ELK domain
PROSITE profilePS5007111.726359422IPR001356Homeobox domain
SuperFamilySSF466894.71E-16361424IPR009057Homeodomain-like
SMARTSM003894.7E-11361426IPR001356Homeobox domain
CDDcd000867.60E-12362423No hitNo description
Gene3DG3DSA:1.10.10.604.6E-25366423IPR009057Homeodomain-like
PfamPF059201.2E-17379418IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MAYQNQHLSQ ELPIQHFTDQ TNNNNNNSFR SILPDSPDPN SKPDSDPNNQ LQTTPNWLNN  60
AILRTHYTDN NNNNNNNDDV TNNVNNDSDG NGASNFLNLQ QTSDTVQTTG QWLARSILHR  120
QHGEVIDNVT MASEVEHELA NMKNDGDSDG LGGKSEVAVV GDGGLVNWQM GRWKAEIMAH  180
PLYEQLLSAH VACLRIATPV DQLPRIDAQL AQSQNVVAKY SAFGQNIGAG VDDKELDHFM  240
SHYVLLLCSF KEQLQQHVRV HAMEAVMACW EIEQSLQSLT GVSPGEGTGA TMSDDEDEQV  300
DSDANLFDGS FDGGADNMGF GPLIPTENER SLMERVRQEL KHELKHGYKE KIVDIREEIL  360
RKRRAGKLPG DTTSVLKAWW QSHSKWPYPT EEDKARLVQE TGLQLKQINN WFINQRKRNW  420
HSNPSTSTVL KSKRKRSQN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1415435RKRNWHSNPSTSTVLKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.141920.0flower| leaf| pod| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Maximally expressed in sepals, petals and fully expanded leaves. Also expressed in other flower organs and in developing leaves. Low level expression in stem internodes.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g012960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1280580.0EF128058.1 Medicago truncatula class II KNOX homeobox transcription factor (KNOX3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465816.10.0homeobox protein knotted-1-like 3 isoform X1
SwissprotO041360.0KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLA0A072VDL50.0A0A072VDL5_MEDTR; Class II knotted-like homeobox protein
STRINGXP_004498766.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.20.0KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]