PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr1g012760.2

Common Name

MTR_1g012760

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

FAR1

Protein Properties

Length: 289aa MW: 33385 Da PI: 6.0157

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr1g012760.2	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26.9	1.6e-08	72	146	7	90
FAR1 7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 A+++GF +++sks+++ + + + C+++g ++++++ + + ++++C +l+ ++g+we+t + +HnHe++ Medtr1g012760.2 72 ATKLGFGIVISKSNNR----GTQTLLLECKRSGVYKKHSNR-----QDTRFKKCECPFRLRGYFLSSGVWELTVMCGKHNHEMM 146 7899*****98877....3557899***9987655.....88899999999999999999**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.7E-6	72	146	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MNALIKFHQD ALIKYHQELL SHIEHCMEDP SADLKPDIAE PVDESLDFAK HFATDKEFTT 60 RDDLLKWVRG EATKLGFGIV ISKSNNRGTQ TLLLECKRSG VYKKHSNRQD TRFKKCECPF 120 RLRGYFLSSG VWELTVMCGK HNHEMMENLE DNPIAGRLNE EEMKLVHEMT NNTVRPKNIL 180 MTLKKRRADD GITIKQIYNA RSRYNKSMKG PKSEELVDDD GVPKEDCSDI SILPELEAIQ 240 IRFNNADYNT KILIKEQLHQ IAFPETMAPC PPAEKENWDF YDFETCEI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr1g012760.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013465799.1	0.0	uncharacterized protein LOC11431780 isoform X1
TrEMBL	A0A072VNX7	0.0	A0A072VNX7_MEDTR; FAR1 DNA-binding domain protein
STRING	AES59040	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF180	11	22

Link Out ? help Back to Top
Phytozome	Medtr1g012760.2
Entrez Gene	11431780

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]