PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g012570.1
Common NameMTR_1g012570
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 238aa    MW: 26768.6 Da    PI: 10.5128
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g012570.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.12.3e-231664149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     k+ +n+sn qvtfskRr g++KKA+EL++LC+a+va+iifs+  k++ +
  Medtr1g012570.1 16 KKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALIIFSPGEKVFSF 64
                     5689****************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-33867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.133868IPR002100Transcription factor, MADS-box
CDDcd002656.25E-35977No hitNo description
SuperFamilySSF554553.53E-28984IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-201030IPR002100Transcription factor, MADS-box
PfamPF003191.2E-241864IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-203045IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-204566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSSGRKSRGR QKIEMKKMSN ESNLQVTFSK RRSGLFKKAS ELCTLCGADV ALIIFSPGEK  60
VFSFGQPNVD TVIDHYLSRV PLKNNGTMQF IEAHRSANVR ELNIQLTQIN QLLDNEKKRD  120
EELSHLRKAN ETQFWWAGSV DGMNRAQLEV FKKALEEIKK LVAHHANRLV IQAAPTQTFP  180
FFVGNGSSSN MPLDHQPNPR QTQMFPAQLF QNPMLQPHLF GFNNMGGGGG YGPSRFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A3e-15976168Myocyte-specific enhancer factor 2A
3kov_B3e-15976168Myocyte-specific enhancer factor 2A
3kov_I3e-15976168Myocyte-specific enhancer factor 2A
3kov_J3e-15976168Myocyte-specific enhancer factor 2A
3p57_A3e-15976168Myocyte-specific enhancer factor 2A
3p57_B3e-15976168Myocyte-specific enhancer factor 2A
3p57_C3e-15976168Myocyte-specific enhancer factor 2A
3p57_D3e-15976168Myocyte-specific enhancer factor 2A
3p57_I3e-15976168Myocyte-specific enhancer factor 2A
3p57_J3e-15976168Myocyte-specific enhancer factor 2A
6byy_A3e-15976269MEF2 CHIMERA
6byy_B3e-15976269MEF2 CHIMERA
6byy_C3e-15976269MEF2 CHIMERA
6byy_D3e-15976269MEF2 CHIMERA
6bz1_A3e-15976269MEF2 CHIMERA
6bz1_B3e-15976269MEF2 CHIMERA
6bz1_C3e-15976269MEF2 CHIMERA
6bz1_D3e-15976269MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}.
UniprotTISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g012570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1453310.0AC145331.19 Medicago truncatula clone mth2-8o7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003588771.11e-178agamous-like MADS-box protein AGL62
SwissprotQ9FKK22e-56AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLG7I7111e-176G7I711_MEDTR; MADS-box transcription factor family protein
STRINGAES590221e-177(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-54AGAMOUS-like 62
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  3. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  4. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  5. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  6. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]