PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g009220.1
Common NameMTR_1g009220
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Trihelix
Protein Properties Length: 320aa    MW: 37270.7 Da    PI: 5.1153
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g009220.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix28.24.9e-092190170
         trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70
                     +Wt  e l L++    +e + + + +  ++W+ +s+++++  + r+  qC+ kw++l  +y++++++++ 
  Medtr1g009220.1 21 EWTLTESLILLNEIAAVEADCSVNFSSYQQWDIISQNCAALDVDRNLAQCRRKWRSLLAEYEEVRRRRRA 90
                     5**************************************************************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.9E-72089No hitNo description
PROSITE profilePS500906.762278IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MTENTRDAVG SRRTRSQAAP EWTLTESLIL LNEIAAVEAD CSVNFSSYQQ WDIISQNCAA  60
LDVDRNLAQC RRKWRSLLAE YEEVRRRRRA WNLDRELFDA VERVVKGREE RGEVDRESDG  120
ELGNEERDVT VEIDMIGTGF KRKRPRSKVE RNSVQKPKKY WPVEPSENLK EKQVPEEIHE  180
EVPENNHMEE EFLKDFLEKK PKLKSPAKRR QKHIETPLQN LPEVDKHHDI EKPKPASVGN  240
ITNNSREENE EMLTLKLQEL AIEIQEISAE SADCKEANTE NIEDYRTEFT RRQGDKLIAR  300
LGNFSNTLKQ LCDLLQECK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17088RRKWRSLLAEYEEVRRRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.113500.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g009220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1576460.0AC157646.35 Medicago truncatula clone mth2-164p8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003588618.10.0uncharacterized protein LOC11421388
TrEMBLG7I5680.0G7I568_MEDTR; Myb/SANT-like DNA-binding domain protein
STRINGAES588690.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67322633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.12e-30sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]