PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0728s0020.1
Common NameMTR_0728s0020
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 626aa    MW: 68699 Da    PI: 7.7677
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0728s0020.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.4e-07290309626
                       -SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                       C+ f++ G C++Gd+C +aHg
  Medtr0728s0020.1 290 CPEFRK-GACRHGDKCEYAHG 309
                       ******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002041.98E-1423166No hitNo description
SuperFamilySSF484034.97E-1723177IPR020683Ankyrin repeat-containing domain
SMARTSM002486702657IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.207.0E-1827168IPR020683Ankyrin repeat-containing domain
PfamPF127967.6E-935140IPR020683Ankyrin repeat-containing domain
SMARTSM002480.09574104IPR002110Ankyrin repeat
PROSITE profilePS5029719.30674177IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.541109144IPR002110Ankyrin repeat
SMARTSM002480.0016109141IPR002110Ankyrin repeat
SMARTSM003569.9E-5284310IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.784284311IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-5290309IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4316348IPR000571Zinc finger, CCCH-type
SMARTSM0035613319342IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MVVCVQLTVE VSTFKDMETL AVNIKDSFPS LLVLASHNDS EGFKLLLEKE GAASINEAGI  60
WYGRQTGSTE IVLEHKTPLM VAATYGSIDV MKVILLYPDV DVNFTCVANK STALHYAASG  120
GSANVVDAVR ILISAGANVS CVNSNGNRPV DLIVVPPNMQ SLKVILEKLL LDNASDNISV  180
GDFSISASVD SSSSGFLENG MSLPYPPSVS PPSPVVDSKF TENKQYPVDP SFPGIKNSMY  240
ASDEFRMFSF KVLRCSRSQS HDWTECPYVH PGEKARRRDL RRFSYSCMAC PEFRKGACRH  300
GDKCEYAHGI FECWLHPDQY RTRLCKDRPR CNKKVCFFAH DEKELRPLPS LTGSGVPSPR  360
SSASAFNAME LAAAMNLLVG SPPSVSSFHP SNFSQPMPPS GNGISFQSAA WAQQNVLGSN  420
FQSNRLGSSL RACNTLPEDF NVLSYLDGQQ NLMKDLSCFS QPGPSSCRSK ALTPSNLEDL  480
FSAEILSSPR YSDPAMASVF SPSHKSAATN ELKQLQHMLS PSNINMLSPK NDEHRLLQAS  540
FSVPSCGSMS PRRLEQISPL SPQMSALPHR EKQQQQLQSV SSRELGYKIP SSVVGSPTDP  600
WSYLGRFPHL RWLQRSLHLL ALSHLL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0728s0020.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510954.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937551e-170C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A072TPV60.0A0A072TPV6_MEDTR; ARM repeat CCCH-type zinc finger protein (Fragment)
STRINGXP_004510954.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-166CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]