PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr0363s0040.1 | ||||||||
Common Name | MTR_0363s0040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | SRS | ||||||||
Protein Properties | Length: 246aa MW: 27429.8 Da PI: 9.193 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 106.6 | 4e-33 | 122 | 216 | 6 | 99 |
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...kskkqsalsstklssae 95 CqdCGn+akkdC+++RCRtCCk rgfdC+thvkstW+pa+ rr+r a ++ a++ +kr++ l ++++ +a s+++ s+a Medtr0363s0040.1 122 RVCQDCGNRAKKDCSYKRCRTCCKGRGFDCSTHVKSTWIPASMRRDRSMVVAEGGDSDGG--ASSGTKRQKILmtsSQNNVAANSHSSSSNAA 212 47*********************************************7766665444433..5555555555522122233333333333333 PP DUF702 96 skke 99 +++ Medtr0363s0040.1 213 TRTR 216 3333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.8E-29 | 123 | 214 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 5.8E-26 | 123 | 165 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MNMLGLRDLV LIAQTPSSLH NQQNQTISSD HNPNLPLPSS SALSVGLGIF PLLTTTHPHH 60 QNPNNNNNND NIHQDSNFWN LKMCQPQQVM MMNSSRKRVE EEDDDVRNKN LMMGCEENGE 120 FRVCQDCGNR AKKDCSYKRC RTCCKGRGFD CSTHVKSTWI PASMRRDRSM VVAEGGDSDG 180 GASSGTKRQK ILMTSSQNNV AANSHSSSSN AATRTRIYYS SANSSLLPLR VHVRSYKIWQ 240 KNLQI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr0363s0040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013442018.1 | 0.0 | protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A072TGC4 | 0.0 | A0A072TGC4_MEDTR; Zinc finger, LRP1 type protein, putative | ||||
STRING | AET02321 | 1e-160 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5704 | 31 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 3e-22 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Medtr0363s0040.1 |
Entrez Gene | 25480954 |
Publications ? help Back to Top | |||
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