PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr0247s0040.1 | ||||||||
Common Name | MTR_0247s0040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB | ||||||||
Protein Properties | Length: 180aa MW: 20926.7 Da PI: 10.0225 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.5 | 9.6e-16 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd l+ ++ ++G g W++I+++ g++R++k+c++rw +yl Medtr0247s0040.1 9 KGAWTYEEDNCLKAYILKHGVGKWHLIPERTGLNRCRKSCRLRWVNYL 56 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.5 | 9.6e-16 | 62 | 107 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r +++++E +l+++++++lG++ W++Ia +++ gRt++++k++w+++l Medtr0247s0040.1 62 RENFSKDEVDLILRLHNLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 107 789*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.888 | 4 | 56 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.79E-29 | 6 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-12 | 8 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 9 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 10 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.44E-9 | 11 | 56 | No hit | No description |
PROSITE profile | PS51294 | 22.748 | 57 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-15 | 61 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 62 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.17E-11 | 64 | 107 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-23 | 64 | 111 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MANTSGVRKG AWTYEEDNCL KAYILKHGVG KWHLIPERTG LNRCRKSCRL RWVNYLNPYI 60 NRENFSKDEV DLILRLHNLL GNRWSLIAGR LPGRTANDVK NYWNTHLRKK VESEAKEKKE 120 KEKSNETMKA HEVIKPRPIT LSSRSHFVHD SNKDRYVPIY QDDSSETMVP SQIGGDYASA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-24 | 9 | 113 | 7 | 110 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr0247s0040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013442258.2 | 1e-132 | transcription factor MYB90 | ||||
Swissprot | Q9FNV9 | 3e-54 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A072TH52 | 1e-131 | A0A072TH52_MEDTR; Myb transcription factor (Fragment) | ||||
STRING | AES99309 | 8e-89 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 8e-53 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | Medtr0247s0040.1 |
Entrez Gene | 25480727 |
Publications ? help Back to Top | |||
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