PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr0198s0030.1

Common Name

MTR_0198s0030

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

HD-ZIP

Protein Properties

Length: 756aa MW: 82233.9 Da PI: 5.1338

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr0198s0030.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.7	1.5e-21	56	111	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe++F+++++p++++r++L+kklgL +qVk+WFqNrR+++k Medtr0198s0030.1 56 KKKYHRHTPQQIQELETFFKECPHPDEKQRTDLSKKLGLANKQVKFWFQNRRTQMK 111 79999************************************************999 PP
2	START	171	7.9e-54	265	487	2	205
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEE.....EEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlq.....kfeeskvdsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 la++a++el+++ + ++p+W ks e +n+de+ + + ++++++ +ea r +g++ ++a lve++ld qW e+++ a+t Medtr0198s0030.1 265 LAQAAMDELISMSQPDSPLWIKSLdgvnEVLNYDEYAKvnslfNDPKQNGFVTEATRQTGLLLINSAGLVETMLDAD-QWAEMFPcmiaGAST 356 6899******************999988888888763332244444449**********************.******9 PP EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS START 82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167 l+vissg g lq+m+ae q++splvp R + f+R+ +q+ +g wv+vdvSv++ ++ + +++ +++lpSg+++e+++ng +k+twv Medtr0198s0030.1 357 LDVISSGmngtrsGSLQVMQAEVQLPSPLVPvRQYSFLRFAKQHVGGIWVVVDVSVNVGRNAANGNPYMSCKKLPSGCILEDLPNGFCKITWV 449 **********************************************************99************************* PP E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 +h ++++++h+++r+lv+sg+a+ga +wvatlqrqc Medtr0198s0030.1 450 DHSQYDESVVHQAYRPLVNSGMAFGAHRWVATLQRQCD 487 **********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.43E-20	44	113	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-21	47	113	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.042	53	113	IPR001356	Homeobox domain
SMART	SM00389	5.6E-19	55	117	IPR001356	Homeobox domain
Pfam	PF00046	4.4E-19	56	111	IPR001356	Homeobox domain
CDD	cd00086	1.97E-17	60	113	No hit	No description
PROSITE pattern	PS00027	0	88	111	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	43.299	255	491	IPR002913	START domain
SuperFamily	SSF55961	4.73E-28	258	488	No hit	No description
CDD	cd08875	3.02E-97	259	486	No hit	No description
SMART	SM00234	2.5E-37	264	488	IPR002913	START domain
Pfam	PF01852	1.2E-45	265	487	IPR002913	START domain
SuperFamily	SSF55961	5.6E-12	532	748	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 756 aa Download sequence Send to blast
MEGNVGMGLI GENFDSGLLG RLRDDDYESR SGSENFDDLS GDDLDVADDQ PKSKKKKKYH 60 RHTPQQIQEL ETFFKECPHP DEKQRTDLSK KLGLANKQVK FWFQNRRTQM KTQLERHENM 120 ILRQENERLR AENSLLKDAM SNPTCSNCGG PAIPGQFSPE DHQLRVENAR LKEELGRVST 180 LTHKFFGRPV SAFGSITMPN PNSGFELGMG RNGVVGPSNF NMSLPMGFGM GDGVMGAPAL 240 QSGLQSPMGM IGNTAQQERA MLIDLAQAAM DELISMSQPD SPLWIKSLDG VNEVLNYDEY 300 AKVNSLFNDP KQNGFVTEAT RQTGLLLINS AGLVETMLDA DQWAEMFPCM IAGASTLDVI 360 SSGMNGTRSG SLQVMQAEVQ LPSPLVPVRQ YSFLRFAKQH VGGIWVVVDV SVNVGRNAAN 420 GNPYMSCKKL PSGCILEDLP NGFCKITWVD HSQYDESVVH QAYRPLVNSG MAFGAHRWVA 480 TLQRQCDSLA VSMSQSDDPT AMTPHGKKSM LKLAQRMSDY FWSGICPSTA CKWDILPISN 540 MGDSDLKIMY RQHPDANSSI VLSAATSVWI PLPRQRVFDF LREAQMRGGW DALSNGGPMQ 600 EVVHIAKGQA LGNSISILSL NNAVNPNGNE GSNLYLQDSW TDSSGSMVVY SPIDSQSLDI 660 LISGGDSSVI PLLPSGFSIL PDGHSNVNNI VGTSSDGSSG NGEGGDNGGC LLTFGLQMLL 720 NNTPTSKLTM ESVESVNAQI SVTIQRIKEA LGVVA*

Sequence ? help Back to Top

Protein Sequence Length: 756 aa Download sequence Send to blast

MEGNVGMGLI GENFDSGLLG RLRDDDYESR SGSENFDDLS GDDLDVADDQ PKSKKKKKYH  60
RHTPQQIQEL ETFFKECPHP DEKQRTDLSK KLGLANKQVK FWFQNRRTQM KTQLERHENM  120
ILRQENERLR AENSLLKDAM SNPTCSNCGG PAIPGQFSPE DHQLRVENAR LKEELGRVST  180
LTHKFFGRPV SAFGSITMPN PNSGFELGMG RNGVVGPSNF NMSLPMGFGM GDGVMGAPAL  240
QSGLQSPMGM IGNTAQQERA MLIDLAQAAM DELISMSQPD SPLWIKSLDG VNEVLNYDEY  300
AKVNSLFNDP KQNGFVTEAT RQTGLLLINS AGLVETMLDA DQWAEMFPCM IAGASTLDVI  360
SSGMNGTRSG SLQVMQAEVQ LPSPLVPVRQ YSFLRFAKQH VGGIWVVVDV SVNVGRNAAN  420
GNPYMSCKKL PSGCILEDLP NGFCKITWVD HSQYDESVVH QAYRPLVNSG MAFGAHRWVA  480
TLQRQCDSLA VSMSQSDDPT AMTPHGKKSM LKLAQRMSDY FWSGICPSTA CKWDILPISN  540
MGDSDLKIMY RQHPDANSSI VLSAATSVWI PLPRQRVFDF LREAQMRGGW DALSNGGPMQ  600
EVVHIAKGQA LGNSISILSL NNAVNPNGNE GSNLYLQDSW TDSSGSMVVY SPIDSQSLDI  660
LISGGDSSVI PLLPSGFSIL PDGHSNVNNI VGTSSDGSSG NGEGGDNGGC LLTFGLQMLL  720
NNTPTSKLTM ESVESVNAQI SVTIQRIKEA LGVVA*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in trichomes forming at the base of young leaves, in endodermal cell lines around emergent lateral roots and in the epidermal layer of the stamen filament. {ECO:0000269\|PubMed:16778018}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr0198s0030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013442370.1	0.0	homeobox-leucine zipper protein ROC6
Swissprot	Q9M2E8	0.0	HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBL	A0A396HLH7	0.0	A0A396HLH7_MEDTR; Putative transcription factor & lipid binding HD-SAD family
STRING	XP_004515730.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1192	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Medtr0198s0030.1
Entrez Gene	25480620

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Horstman A, et al. AIL and HDG proteins act antagonistically to control cell proliferation. Development, 2015. 142(3): p. 454-64 [PMID:25564655]