PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0197s0010.1
Common NameMTR_0197s0010
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 230aa    MW: 26232.6 Da    PI: 6.0387
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0197s0010.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.8e-17550348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +WT+eEd ll+++++q+G g W++++   g++R++k+c++rw++yl
  Medtr0197s0010.1  5 AWTEEEDHLLKKCIQQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYL 50
                      7*******************************************97 PP
2Myb_DNA-binding49.78.5e-1656100147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg++ +eE e +v+++k+lG++ W++Ia +++ gRt++++k++w+ +
  Medtr0197s0010.1  56 RGNFAEEEVEMIVKLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNCH 100
                       8999******************.*********.***********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.777150IPR017930Myb domain
SMARTSM007175.8E-13252IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-21557IPR009057Homeodomain-like
SuperFamilySSF466891.28E-27597IPR009057Homeodomain-like
PfamPF002491.1E-15550IPR001005SANT/Myb domain
CDDcd001671.34E-10550No hitNo description
PROSITE profilePS5129424.95151105IPR017930Myb domain
SMARTSM007174.7E-1555103IPR001005SANT/Myb domain
PfamPF002492.7E-135698IPR001005SANT/Myb domain
CDDcd001671.02E-1058101No hitNo description
Gene3DG3DSA:1.10.10.604.2E-2458106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGGVAWTEEE DHLLKKCIQQ YGEGKWHRVP LLAGLNRCRK SCRLRWLNYL RPNIKRGNFA  60
EEEVEMIVKL HKLLGNRWSL IAGRLPGRTA NDVKNYWNCH LSKKLNALEA DQDRSQSSKD  120
VQIIRPQARN IGSSSVKRRS QGESPTDQVL VQQESDMTTF DADGKNHMLE SQQDMMVYSC  180
LDQQGMVGEF PMDFQLEGFE AMVSGGEGSS SQWNWEDLLL DMDLYNGFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-22610710110B-MYB
1gv2_A2e-2261057105MYB PROTO-ONCOGENE PROTEIN
1h88_C8e-22510560159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-22510560159MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-2261057105C-Myb DNA-Binding Domain
1msf_C2e-2261057105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0197s0010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0522790.0BT052279.1 Medicago truncatula clone MTYF9_FA_FB_FC1G-G-24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013442371.11e-172transcription factor MYB1
SwissprotQ9FNV92e-54MY113_ARATH; Transcription factor MYB113
TrEMBLA0A072TGV71e-170A0A072TGV7_MEDTR; Myb transcription factor
STRINGXP_007140451.11e-131(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.18e-57myb domain protein 113
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]