PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr0140s0010.1 | ||||||||
Common Name | MTR_0140s0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | Nin-like | ||||||||
Protein Properties | Length: 239aa MW: 27938.7 Da PI: 5.2283 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 28.6 | 2.8e-09 | 150 | 167 | 35 | 52 |
RWP-RK 35 iCRqyGIkRWPhRkiksl 52 +CR++GI+RWPhRk+ sl Medtr0140s0010.1 150 KCRELGIRRWPHRKLMSL 167 8**************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 9.898 | 101 | 188 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
GIISEYLLMN DKFPIHDDGL EFEELMKCNS PHNPLYIEPM PSLEGYHQTM PHSQFKFWLY 60 LLINTVAADD YGISYDVEKG FGDWREIIND AAFGSDKLYL CYTNENSGNE IKKEVVEVKP 120 ERVERISDGN TKNLSRKIIS QYFYYANNTK CRELGIRRWP HRKLMSLQTL INNIQELGKE 180 DGLRSDEKFM DIEKLEEEMK LVEEMPDMQL QDHTKRLRQH WTAIVPAKNK YSSLTSVS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr0140s0010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004508743.1 | 1e-46 | protein RKD1 | ||||
TrEMBL | A0A072TGT4 | 1e-178 | A0A072TGT4_MEDTR; RWP-RK domain protein (Fragment) | ||||
STRING | AES91254 | 1e-163 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6184 | 30 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74480.1 | 3e-19 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr0140s0010.1 |
Entrez Gene | 25480439 |
Publications ? help Back to Top | |||
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