PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr0036s0260.1 | ||||||||
Common Name | MTR_0036s0260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB_related | ||||||||
Protein Properties | Length: 207aa MW: 23328.2 Da PI: 10.0303 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.2 | 2.8e-11 | 29 | 73 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT eE++l+ + ++ +g+W+ I+r k+Rt+ q+ s+ qky Medtr0036s0260.1 29 PWTDEEHKLFSVGLQKVDKGDWRGISRNYVKTRTPMQVASHAQKY 73 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.0E-5 | 26 | 76 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 2.8E-13 | 28 | 75 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 2.26E-14 | 28 | 77 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-7 | 29 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.098 | 29 | 74 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 4.0E-8 | 29 | 73 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.23E-8 | 29 | 74 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MFGAEFLRAV FCVPPVLCVF CEFASGLIPW TDEEHKLFSV GLQKVDKGDW RGISRNYVKT 60 RTPMQVASHA QKYFLCRSNL NRCRRRSSLF DITTDRGYFL LAIVRNVNVR TNLFHLKSLY 120 GATKNRNGSP ISVNKYEQYL SAVAFAVTTF GTVALMSGFF LKPVATLDDY LANVLPLFGG 180 FLSILGVSEV SYMFSFPPNI KFFPRL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.4350 | 6e-85 | flower| glandular trichome| leaf| pod| root| seed| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr0036s0260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC229719 | 1e-143 | AC229719.7 Medicago truncatula clone mth2-82f6, complete sequence. | |||
GenBank | CT963078 | 1e-143 | CT963078.4 M.truncatula DNA sequence from clone MTH2-47F5 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A072TIE3 | 1e-150 | A0A072TIE3_MEDTR; Myb-like DNA-binding domain, shaqkyf class protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70000.2 | 1e-24 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr0036s0260.1 |
Entrez Gene | 25479877 |
Publications ? help Back to Top | |||
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