PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0022s0430.1
Common NameMTR_0022s0430
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Nin-like
Protein Properties Length: 858aa    MW: 96207.1 Da    PI: 5.7623
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0022s0430.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.82.4e-29570621152
            RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                       aek+isle+l+ yFs+++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++
  Medtr0022s0430.1 570 AEKSISLEVLQDYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 621
                       589***********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.291560641IPR003035RWP-RK domain
PfamPF020425.7E-26574621IPR003035RWP-RK domain
SuperFamilySSF542771.28E-23760847No hitNo description
SMARTSM006662.1E-24762844IPR000270PB1 domain
PROSITE profilePS5174521.718762844IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2401.3E-25763843No hitNo description
CDDcd064073.15E-34763843No hitNo description
PfamPF005643.4E-18763843IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 858 aa     Download sequence    Send to blast
MQKSEEENHD LPQKSKPLDE NVFSMDYDID FETSWPLDHI SNSMHPFFLQ NISEQPFSPI  60
WTFSDDDHNI AASGNNKNII TENRVENDDK HKRVTPHIGL PPLQNPHGYC LIKERMTQAL  120
RNFKELTELN VLAQVWAPVR NGSRYKLTTS GQPFVLDAHS NGLHQYRTVS LMYMFSVDGE  180
NDEVLGLPGR VFQQKLPEWT PNVQYYSSKE YSRLNHALHY NVRGTLALPV FEPPGQSCVA  240
VLELIMTSQK INYAPEVDKV CKALEAVNLR SSEILEHPYS QICNEDRQNA LSEILEILTV  300
VCETHNLPLA QTWVPCRHRS VLAHGGGLKK NCSSFDGYCM GQVCMSITEV AFYIIDSHTW  360
GFHDACVEHH LQQGQGVAGR AFLSQNMCFC RNITQFCKTD YPLVHYALMF DLTSSFSICL  420
QSSHTGGDDY VLEFFLPPSI NKFCEQKGLL GSILATMKQN FQSLKVASGV ELEEDGSVEI  480
VEIINGTVHS RLESVPIIQS TKLSARHDDA SPDMEEGVPL DQSRQKIITN FDDINDIGNL  540
DDYAGGSIDQ IHSLKTETKK KPSLRKRGKA EKSISLEVLQ DYFSGSLKDA AKSLGVCPTT  600
MKRICRQHGI SRWPSRKIKK VNRSLSKLKC VIESVHGVEG AFGLDSPSTS TIPIAAGSFN  660
EPSTSNKFEH HTSLSIMPSE PKKNENYLDA SKSEPQKPLG GMLIEGADSS KDLKNLCPST  720
DVVLEDQVLE ASRIHPPCSD FVHMQMQHMD TLNFAAQKEM KIVTIKATYR DDIIRFRVSW  780
NCGIVELREE IAKRLKLEVG TFDIKYLDDD QEWILVACDA DLQECMDILT LSGSNIIRLV  840
VHDILSILGS SVESSGE*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269|PubMed:18826430}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269|PubMed:18826430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0022s0430.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269|PubMed:18826430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013443315.10.0protein NLP7 isoform X1
SwissprotQ84TH90.0NLP7_ARATH; Protein NLP7
TrEMBLA0A072TUX00.0A0A072TUX0_MEDTR; Plant regulator RWP-RK family protein
STRINGGLYMA09G25230.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42573456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.10.0NIN like protein 7
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Xu N, et al.
    The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators.
    Plant Cell, 2016. 28(2): p. 485-504
    [PMID:26744214]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Yu LH, et al.
    Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation.
    Sci Rep, 2016. 6: p. 27795
    [PMID:27293103]
  5. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]
  6. Yan D, et al.
    NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 13179
    [PMID:27731416]
  7. Guan P, et al.
    Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
    [PMID:28202720]
  8. Liu KH, et al.
    Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks.
    Nature, 2017. 545(7654): p. 311-316
    [PMID:28489820]
  9. Li Z, et al.
    The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1.
    New Phytol., 2017. 216(4): p. 1205-1222
    [PMID:28850721]
  10. Cao H, et al.
    Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation.
    Front Plant Sci, 2017. 8: p. 1703
    [PMID:29051766]
  11. Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
    Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
    Microbes Environ., 2017. 32(4): p. 314-323
    [PMID:29187692]
  12. Karve RA,Iyer-Pascuzzi AS
    Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release.
    Plant Signal Behav, 2018. 13(1): p. e1414122
    [PMID:29215953]
  13. Zhao L, et al.
    The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium.
    Sci Rep, 2018. 8(1): p. 1487
    [PMID:29367694]