PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr0008s0470.1 | ||||||||
Common Name | MTR_0008s0470 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB | ||||||||
Protein Properties | Length: 292aa MW: 33299.9 Da PI: 5.2108 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.9e-16 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+ +v+++G +W+ ++ g+ R++k+c++rw++yl Medtr0008s0470.1 15 KGTWTAEEDRKLIAYVTRYGFWNWRQLPKFAGLSRCGKSCRLRWLNYL 62 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 60.2 | 4.6e-19 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+el+++ +k+lG++ W+tIa++++ gRt++++k++w++ Medtr0008s0470.1 68 RGNFTKDEEELIIRMHKKLGNK-WSTIAAELP-GRTDNEVKNHWHT 111 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.451 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.59E-30 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-12 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-14 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-23 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.26E-9 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 27.533 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-17 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-16 | 68 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.24E-12 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-25 | 70 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MARTPSCDKI SGMRKGTWTA EEDRKLIAYV TRYGFWNWRQ LPKFAGLSRC GKSCRLRWLN 60 YLRPNIRRGN FTKDEEELII RMHKKLGNKW STIAAELPGR TDNEVKNHWH TSLKKRAIDN 120 IVTNEETKST KSKDIIESTQ GRDISNYQIT PPDSSQISNN NGPLSPFSSS SEISSTSSDD 180 FGFLDSFIKD VDISFWLHDI SNTPSGIVQN NNNDATTNNA FLVSPGNSSN ESFVMDNDFG 240 SFLDAYNEST VDSFWTQPYE ADMYHVPRQM LTSLPMESEY FSIVYDDDIW S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-28 | 10 | 117 | 2 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.22394 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr0008s0470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT138850 | 1e-162 | BT138850.1 Medicago truncatula clone JCVI-FLMt-15C13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013443539.1 | 0.0 | transcription factor MYB13 | ||||
TrEMBL | A0A072TJ06 | 0.0 | A0A072TJ06_MEDTR; Myb-related transcription factor | ||||
STRING | XP_004513558.1 | 1e-135 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 1e-55 | myb domain protein 14 |
Link Out ? help Back to Top | |
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Phytozome | Medtr0008s0470.1 |
Entrez Gene | 25479522 |
Publications ? help Back to Top | |||
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