PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0008s0390.1
Common NameMTR_0008s0390
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 273aa    MW: 31187.7 Da    PI: 5.6415
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0008s0390.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.5e-161562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g WT+eEd +l+ +v+++G  +W+  ++  g+ R++k+c++rw++yl
  Medtr0008s0390.1 15 KGTWTAEEDRKLIAYVTRYGCWNWRQLPKFAGLSRCGKSCRLRWLNYL 62
                      799*****************99************************97 PP
2Myb_DNA-binding62.96.4e-2068111146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg++T+eE+el+++ +k+lG++ W+tIa++++ gRt++++k++w++
  Medtr0008s0390.1  68 RGNFTQEEEELIIRMHKKLGNR-WSTIAAELP-GRTDNEVKNHWHT 111
                       89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3211062IPR017930Myb domain
SuperFamilySSF466893.33E-3012109IPR009057Homeodomain-like
SMARTSM007175.9E-111464IPR001005SANT/Myb domain
PfamPF002498.7E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-241669IPR009057Homeodomain-like
CDDcd001675.72E-91762No hitNo description
PROSITE profilePS5129428.33263117IPR017930Myb domain
SMARTSM007171.8E-1867115IPR001005SANT/Myb domain
PfamPF002493.2E-1768111IPR001005SANT/Myb domain
CDDcd001673.72E-1370113No hitNo description
Gene3DG3DSA:1.10.10.603.7E-2670116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MARTPSCDKK SGMRKGTWTA EEDRKLIAYV TRYGCWNWRQ LPKFAGLSRC GKSCRLRWLN  60
YLRPNIKRGN FTQEEEELII RMHKKLGNRW STIAAELPGR TDNEVKNHWH TSLKKRAIDN  120
IVTNEETKST QGRCVSNYQI TLPANSQISD TNGPLSPFSS SSELSSTSSD HNSTALDDFG  180
FLDSFIEDVD ESFWLHNLSN KPSGIVQNHT TESFVMDNDF GSFLDAYNES TVDSFWTQPY  240
EVDMSHVPTE LLIPLSMESE NFSIVYDKDI WS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29131175108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.231740.0root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269|PubMed:24415840}.
UniprotTISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269|PubMed:24415840}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0008s0390.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1388500.0BT138850.1 Medicago truncatula clone JCVI-FLMt-15C13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013443536.10.0transcription factor WER
SwissprotQ9SJX81e-56MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A072TK550.0A0A072TK55_MEDTR; Myb-related transcription factor
STRINGXP_004513558.11e-123(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-56myb domain protein 14
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]