PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0008s0280.1
Common NameMTR_0008s0280
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 232aa    MW: 27173.3 Da    PI: 6.6764
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0008s0280.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEde+l+  ++++G ++W+  +r  g+ R++k+c++rw +yl
  Medtr0008s0280.1 14 KGAWSKEEDERLIAHIERHGHPNWRQLPRVAGLARCGKSCRLRWMNYL 61
                      79********************************************97 PP
2Myb_DNA-binding52.61.1e-1667112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ T+ E++ + +++k++G++ W++Ia+ ++ gR+++++k++w+++l
  Medtr0008s0280.1  67 RGNYTQKEEQMIMELHKKHGNK-WSLIAENLP-GRSDNEIKNYWHSHL 112
                       899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.8E-22864IPR009057Homeodomain-like
PROSITE profilePS5129417.058961IPR017930Myb domain
SuperFamilySSF466891.55E-2912108IPR009057Homeodomain-like
SMARTSM007176.5E-131363IPR001005SANT/Myb domain
PfamPF002491.8E-141461IPR001005SANT/Myb domain
CDDcd001678.10E-101661No hitNo description
PROSITE profilePS5129425.06962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.6E-2665114IPR009057Homeodomain-like
SMARTSM007171.5E-1566114IPR001005SANT/Myb domain
PfamPF002499.0E-1667112IPR001005SANT/Myb domain
CDDcd001671.17E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MVRAPYFDKN GTKKGAWSKE EDERLIAHIE RHGHPNWRQL PRVAGLARCG KSCRLRWMNY  60
LRPNLKRGNY TQKEEQMIME LHKKHGNKWS LIAENLPGRS DNEIKNYWHS HLQKFSKCND  120
SKLTQEIESP KTTSEVVSVD SHHILESSFS MSSEMSYPNN KVNSPSISSS HVESNMDFYK  180
RDQDSVVSWE TWDGFSNNFW TEPFVYENAL GQDYFPISCY EEEVEDPFVL W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-251411427126MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0008s0280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013443533.11e-174transcription factor MYB8
TrEMBLA0A072TL121e-173A0A072TL12_MEDTR; Myb transcription factor
STRINGXP_004507244.11e-108(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.29e-55myb domain protein 9
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]