PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr0007s0330.2 | ||||||||
Common Name | MTR_0007s0330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 164aa MW: 18879.8 Da PI: 8.9845 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.8 | 3.5e-12 | 9 | 58 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h+e Er+RR+++ + +Lr+llP ++K s ++ + +A++YI++Lq Medtr0007s0330.2 9 MHKETERQRRQEMSNLCTNLRSLLPIeY---IKGKRSISDHVNEAMHYINHLQ 58 7*************************77...*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.75E-11 | 3 | 62 | No hit | No description |
SuperFamily | SSF47459 | 5.76E-15 | 4 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.836 | 5 | 57 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-10 | 7 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-9 | 9 | 58 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0029 | 11 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MMEENKKWMH KETERQRRQE MSNLCTNLRS LLPIEYIKGK RSISDHVNEA MHYINHLQNK 60 VKQLQDKKEE LMKVSNLSRN VTTQNGSSSS NIQPFVIVQP FPGGLEIVCS YSFNKCLFPL 120 SRVLSMLLKE GLNLISCTSN MIEGRFIYTI RSEVNSACSI NYE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr0007s0330.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024630580.1 | 1e-110 | transcription factor bHLH36 | ||||
TrEMBL | A0A072TJH2 | 1e-116 | A0A072TJH2_MEDTR; Transcription factor | ||||
STRING | XP_004506301.1 | 2e-77 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 1e-34 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr0007s0330.2 |
Entrez Gene | 25479498 |
Publications ? help Back to Top | |||
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