PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0007s0220.1
Common NameMTR_0007s0220
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Trihelix
Protein Properties Length: 1009aa    MW: 113978 Da    PI: 7.4785
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0007s0220.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix29.81.5e-092182841481
          trihelix  14 rremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                       r+e e  ++rgk ++ + +ev++++ ++g++r +k+   kw+n+ ++++k+ e+e++++ e++   +y
  Medtr0007s0220.1 218 RTEQEMGMSRGKTRADKDKEVAEFLNKHGVNRDAKTAGTKWDNMLGEFRKVYEWERGGEREQV-GKSY 284
                       66888889999*********************************************9965555.3445 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001801.32E-13793981No hitNo description
SuperFamilySSF561129.06E-17812980IPR011009Protein kinase-like domain
Gene3DG3DSA:1.10.510.102.6E-8842982No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016310Biological Processphosphorylation
GO:0016301Molecular Functionkinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1009 aa     Download sequence    Send to blast
MVGDKGDTSK KQPQQQQQFS SSSSPKPQHE ESIIETTRPI HHHHQHQQSS SSQQIVVSGS  60
GTNPFISTPL YVSSGGASSS PFETQFETSL TTKRPRYSGQ WKLLPSPTQQ QKQPQITNIL  120
NPTTESKSTT PSPSNLPQQQ PQTTPLAASS SETTSSQSHD HSPMPCQEGN RLQELEQQVH  180
QQLRKGKYVS PVWKPNEMLW LARAWKEQYQ TSSETSSRTE QEMGMSRGKT RADKDKEVAE  240
FLNKHGVNRD AKTAGTKWDN MLGEFRKVYE WERGGEREQV GKSYFRLSPY ERKLHRLPAS  300
FDEEVFEELS QFMGSRMRSS HGGGGGGRVG SSFVSCDEAR TRSLPPPRPF KDDDLPLSAR  360
TKQLAMTSGG GEPFFHGHRG NILGLDSLME ISTPSSSSKE LRRIGKIRMV WEESVSLWGE  420
EGEVHRGRIR VQNSSFLHAD ELTCFDDAMV ICPLESFEDG PFKGFSVDRF VSGQQVKVFG  480
RRKSSSTSSG FAERVQPINK PIPIRSIVPL DFRDPTEYYM DCLLRISSPQ SLPTLFELKH  540
HLQEPPPQNL RFPLRKEVFD DLPQGKEFFF TTTSEPLDCR SIIYDIVGPI IRTNNNINNP  600
STLPFSSRDS FIGLWDDCIN RVVSRFCHDE MVITRKPFLS FSSQSQDTLL LQDEWPNVSG  660
FVNNFCLWRG EECEEFKENI QNPSSTIIQK LLWSYLDLPY ILGYYAIGNK VTFCALSKSQ  720
EDGKIIRTDL HQVNLTTPSE RFKALGPCFR IGILLSMLSK ACSNMQKGSF VYSDFERYSF  780
GQGVLIEMTP NTCKRVFLEK RKFSSVKEVY EILDHRIPHS EYLVKVLENN MSLVFKPRGI  840
RAKPLNIEQL VEALKYVTKA LVALHDLSFM HRDLCWEKVT MRNDREGGEW FVSGFDEAAG  900
APELGKYVKD NHEGGMVERG RHAPEMERGL HGVKVDVWSV GYLIMTCGLV NVPKMLRELQ  960
NWCMEQNPEQ RPTAADCYHH LLQLQSTLLV SGGVVAGSCG VSGGGGLM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0007s0220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630589.10.0uncharacterized protein LOC25479493
TrEMBLA0A072TK710.0A0A072TK71_MEDTR; Kinase superfamily protein
STRINGXP_004506307.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118572831
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.14e-08Trihelix family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]