PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0002s1250.1
Common NameMTR_0002s1250
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 265aa    MW: 30606.1 Da    PI: 7.5902
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0002s1250.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.14.7e-20111171259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       dDg++Wr YGqK++ +s++ r YYrCt++   +C+++k+v + +e+p + +itY g+H++e
  Medtr0002s1250.1 111 DDGHQWRQYGQKKIANSQYFRTYYRCTHKydqRCKTTKQVHKIQENPPLYKITYYGHHTCE 171
                       8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-2296172IPR003657WRKY domain
PROSITE profilePS5081116.547105168IPR003657WRKY domain
SuperFamilySSF1182903.4E-20105171IPR003657WRKY domain
SMARTSM007744.6E-25110172IPR003657WRKY domain
PfamPF031066.2E-20111171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDNYGKAMEE VMRGCELANQ LRQVLLKNNE LTTTSLAQNL VNNVINSFNS AIFILSNDKN  60
IPIDQVQNDF SSINPVIRSI DFKETSTTTR GCYKRRRTTQ TWEKVTETPT DDGHQWRQYG  120
QKKIANSQYF RTYYRCTHKY DQRCKTTKQV HKIQENPPLY KITYYGHHTC ENMSNLPHII  180
DDPNDTFPII LLSFNNTFST PSKHEGPFLS SSHLVEYKEE VPSSSLEISN PISPNPTLDN  240
SISRLESDHT QWRSQEIYGA WAKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-18111170968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00070PBMTransfer from AT5G01900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0002s1250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013443719.10.0probable WRKY transcription factor 62
TrEMBLA0A072TJM10.0A0A072TJM1_MEDTR; Putative transcription factor WRKY family
STRINGXP_004510907.13e-77(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.12e-29WRKY DNA-binding protein 62
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]