PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr0001s0490.1

Common Name

MTR_0001s0490

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

GRF

Protein Properties

Length: 338aa MW: 37217 Da PI: 7.9576

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr0001s0490.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.4	6.9e-25	89	133	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ Medtr0001s0490.1 89 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVES 133 79****************************************986 PP
2	QLQ	59.7	8.1e-21	24	58	1	35
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 s+FT +Q+q+L++Q+l++Ky++a++PvPp+L+ +i Medtr0001s0490.1 24 SPFTVSQWQELEHQALIFKYMVAGLPVPPDLVHPI 58 89******************************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.3E-10	24	60	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	8.9E-16	25	58	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.628	25	60	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.762	89	133	IPR014977	WRC domain
Pfam	PF08879	3.0E-21	90	132	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MNSSGGGSSN GGGVGMMMGY SKSSPFTVSQ WQELEHQALI FKYMVAGLPV PPDLVHPIHS 60 SFHSLSSNNF FHHPIPTLSY CSFYGKKVDP EPGRCRRTDG KKWRCSKEAY PDSKYCERHM 120 HRGRNRSRKP VESQTMAQST STVTSLTVAG GSSRAGNFQN IPTTNAFGSV QNTTGSGTDR 180 ADYHLDTIPY GIPSKEYRYL QGLKSEGGEH SFFAEASRGD NKGLQMESQL ENTWPLMSTR 240 VASFSASKSS CNNSMLQSDY PQHSFLSSEY GSGEAVKEEG QPLRPFFREW PKSRESWSGL 300 EDERSNQTAF STTQLSISIP MSSSEFSATS SQSPHDN*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.16787	0.0	glandular trichome\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr0001s0490.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013443735.1	0.0	growth-regulating factor 4
TrEMBL	A0A072TW62	0.0	A0A072TW62_MEDTR; Growth-regulating factor
STRING	XP_004506549.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4781	29	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	3e-41	growth-regulating factor 5

Link Out ? help Back to Top
Phytozome	Medtr0001s0490.1
Entrez Gene	25479294

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]