PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr0001s0360.1 | ||||||||
Common Name | MTR_0001s0360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 254aa MW: 29218.2 Da PI: 8.0834 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.9 | 3.6e-16 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ll+ ++ ++G g W++++++ ++R++k+c++rw++yl Medtr0001s0360.1 9 KGAWTYEEDKLLKACIDKYGEGKWHLVPQRAELNRCRKSCRLRWLNYL 56 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 43.3 | 8.6e-14 | 63 | 107 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++ ++E + +++++k+lG++ W++Ia +++ gRt++++k++w+++l Medtr0001s0360.1 63 ESFAEDEVDMILRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWHTHL 107 66789999*************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.709 | 1 | 56 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-20 | 6 | 58 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.09E-27 | 6 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-12 | 8 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-15 | 9 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.98E-9 | 11 | 56 | No hit | No description |
PROSITE profile | PS51294 | 23.974 | 57 | 111 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-22 | 59 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.7E-14 | 61 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-12 | 62 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.37E-10 | 67 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 254 aa Download sequence Send to blast |
MDMPRGVRKG AWTYEEDKLL KACIDKYGEG KWHLVPQRAE LNRCRKSCRL RWLNYLSPNI 60 KRESFAEDEV DMILRLHKLL GNRWSLIAGR LPGRTANDVK NYWHTHLHKK VVSRTQEEKK 120 EKTKETMKFH EIIRPQPRTF STHSPSLNGK HNINATPIVA ISTQHCEVSP NRDNKEITVP 180 NQIGRDIVGV SEPSLGNAPI PCAMWWDGLL NLQCGEKIGS GSSLQEENFI EFPNVDDSFW 240 DFNLCDYDSL LDH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 9 | 111 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr0001s0360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FJ199996 | 0.0 | FJ199996.1 Medicago truncatula MYB transcription factor LAP2 mRNA, complete cds. | |||
GenBank | JQ690285 | 0.0 | JQ690285.1 Medicago truncatula cultivar Jemalong MYB transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013443731.1 | 0.0 | transcription factor MYB113 | ||||
Swissprot | Q9FNV9 | 8e-61 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A396GVZ7 | 0.0 | A0A396GVZ7_MEDTR; Putative transcription factor MYB-HB-like family | ||||
STRING | AES99320 | 1e-153 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66370.1 | 9e-62 | myb domain protein 113 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr0001s0360.1 |
Entrez Gene | 25479290 |
Publications ? help Back to Top | |||
---|---|---|---|
|