PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 98766
Common NameDP, MICPUN_98766
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family E2F/DP
Protein Properties Length: 451aa    MW: 47377 Da    PI: 4.8386
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
98766genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP88.35.6e-28187267371
  E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
              +k+Lr++++k   ++ek+e+ g++t+neva+eLv+e               d+kn+rRR+YD+lNVL+a+++i+k ek+ei+wkg
    98766 187 GKGLRHFSMK---VCEKVESkGTTTYNEVADELVAEfskpddpkfcadqayDEKNIRRRVYDALNVLMAMDIISK-EKKEITWKG 267
              79********...*****999******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-45181272IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.5E-34185267IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.1E-25188267IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.45E-21188268IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM011381.9E-46275407IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.86E-31275378No hitNo description
PfamPF087816.8E-32276382IPR014889Transcription factor DP, C-terminal
CDDcd144583.08E-41276375IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MPTKSAVEAA IGADDELGEE LLESLRDTGM YNFASEFDVM QEHMGTPDDG PGPSGLDTEL  60
AFNDEGGHVL GDLPSSAMKA AGEPIVVGLG NEIVGKAAVT AATEAVNHAR QRIDMVTSEG  120
GLDGAGAGDP SSPPRASARA SAGGAVTPTP EPNSAAKRRR ISAGATGGST PGPSAAGLST  180
AEKEKGGKGL RHFSMKVCEK VESKGTTTYN EVADELVAEF SKPDDPKFCA DQAYDEKNIR  240
RRVYDALNVL MAMDIISKEK KEITWKGLPA TAKEDDMEAL RAEKARAQAS IEKKNAYLLE  300
LVEQYKSYQA LLQRNAARAA AGVVPSGIQL PFILVQTKPN ATVEVEISED QQIVHFDFNS  360
TPFQIHDGNF VLAQMNLTEN SMANLNLDAE VKAEPINGHG LNGGDDALVG ELVGGPSAHG  420
SPKGKVKGKA KGEATEPEVK IEGGRRGKKK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-37184274695PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156160KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013230.0CP001323.1 Micromonas sp. RCC299 chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002499736.10.0predicted protein
TrEMBLC1DYS40.0C1DYS4_MICCC; Uncharacterized protein
STRINGXP_002499736.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP15991417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.18e-80Transcription factor DP
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]