PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 92928 | ||||||||
Common Name | MICPUN_77618 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 695aa MW: 78847.2 Da PI: 9.1492 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.7 | 6.5e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l 92928 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 29.9 | 1.3e-09 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT +Ede+l+++ k++++ W+t+a +g Rt+ qc +r+ k+l 92928 60 TEWTRQEDEKLLHLAKLMPTQ-WRTVAPIVG--RTPAQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.567 | 1 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.58E-12 | 10 | 53 | No hit | No description |
Pfam | PF13921 | 8.6E-13 | 10 | 70 | No hit | No description |
SuperFamily | SSF46689 | 6.11E-20 | 33 | 108 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 7.95E-31 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-13 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.209 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-11 | 58 | 105 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 695 aa Download sequence Send to blast |
MRILIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTRQEDEKL LHLAKLMPTQ WRTVAPIVGR TPAQCLERYE KLLDAACQQD SNDALDDPRR 120 LKPGEIDPNP ESKPARPDPV DMDEEEKEML SEARARLANT KGKKAKRKAR EKQLEEARRL 180 ASLQKRRELK AAGIDTVKRA KRLKGIDYNA EIPFERKPAP GFFDGSLERR ALTLLSEETF 240 EPKGLADFEG GRQHDIEENL RKQDVKRQRI VQRHGVPHVM QTVDNNDPGN HRLHSELNLP 300 PPRVRESELD HAIRANGVLA HHERSSAHTV YQTLPDDKRF GNLARIGMPS GPDGISVSSR 360 SSPAQSIIGN EHLSSQFSQQ NDDVWVGHDV VTAAGAVKCA MASLPVPNNE YQIVLPTPKP 420 EQNNADHLRD FDRMNANLNS SSSPIERATH LKSKLRCLAR PSSFCIDSRT DTLRCSAEQI 480 ISRELGQMLE HHSLEHALHD TARLLTSPIS LKQLALSAAL ITREINALRC TSDQLVNSDE 540 IIYASNYAHN DCIMDKSTSH VILSKIYGSY DTNTTPPSGE HARACTSMMR DARRAGKIGH 600 RIEIVTSGLQ QRSAELHRRL SHIYAELVSM DHQYCSYNTL LYREQETYVQ RVRSQKNMIT 660 LASEKERQHQ FLHTQRASLL RTSEPQVEIC ENKR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 1e-122 | 2 | 315 | 3 | 313 | Cell division cycle 5-like protein |
5xjc_L | 1e-122 | 2 | 315 | 3 | 313 | Cell division cycle 5-like protein |
5yzg_L | 1e-122 | 2 | 315 | 3 | 313 | Cell division cycle 5-like protein |
5z56_L | 1e-122 | 2 | 315 | 3 | 313 | Cell division cycle 5-like protein |
5z57_L | 1e-122 | 2 | 315 | 3 | 313 | Cell division cycle 5-like protein |
5z58_L | 1e-122 | 2 | 315 | 3 | 313 | Cell division cycle 5-like protein |
6ff4_L | 1e-122 | 2 | 315 | 3 | 313 | Cell division cycle 5-like protein |
6ff7_L | 1e-122 | 2 | 315 | 3 | 313 | Cell division cycle 5-like protein |
6icz_L | 1e-122 | 2 | 315 | 3 | 313 | Cell division cycle 5-like protein |
6id0_L | 1e-122 | 2 | 315 | 3 | 313 | Cell division cycle 5-like protein |
6id1_L | 1e-122 | 2 | 315 | 3 | 313 | Cell division cycle 5-like protein |
6qdv_O | 1e-122 | 2 | 315 | 3 | 313 | Cell division cycle 5-like protein |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP001574 | 0.0 | CP001574.1 Micromonas sp. RCC299 chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002507153.1 | 0.0 | predicted protein | ||||
TrEMBL | C1FDL9 | 0.0 | C1FDL9_MICCC; Uncharacterized protein | ||||
STRING | XP_002507153.1 | 0.0 | (Micromonas sp. RCC299) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP1040 | 16 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G09770.1 | 1e-140 | cell division cycle 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 92928 |
Entrez Gene | 8250085 |
Publications ? help Back to Top | |||
---|---|---|---|
|