PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 89813 | ||||||||
Common Name | MICPUN_89813, NFYB | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Family | NF-YB | ||||||||
Protein Properties | Length: 139aa MW: 15371.1 Da PI: 4.7752 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 188.8 | 3.9e-59 | 20 | 116 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 vreqdrflPian+srimkk+lPanaki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa++tlGfe+yveplkvyl+kyre+egek 89813 20 VREQDRFLPIANISRIMKKALPANAKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMSTLGFEEYVEPLKVYLHKYRETEGEK 116 69********************************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.0E-56 | 16 | 126 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.33E-41 | 23 | 124 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.0E-28 | 26 | 90 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 7.7E-23 | 54 | 72 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 57 | 73 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 7.7E-23 | 73 | 91 | No hit | No description |
PRINTS | PR00615 | 7.7E-23 | 92 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MSDANDPDVD DDDDDKGGNV REQDRFLPIA NISRIMKKAL PANAKIAKDA KETVQECVSE 60 FISFITSEAS DKCQREKRKT INGDDLLWAM STLGFEEYVE PLKVYLHKYR ETEGEKATSI 120 KHGDAAAKKA DVSGKQTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 7e-49 | 20 | 111 | 1 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 7e-49 | 20 | 111 | 1 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP001574 | 0.0 | CP001574.1 Micromonas sp. RCC299 chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002507332.1 | 1e-98 | histone-like transcription factor | ||||
Swissprot | O23310 | 1e-65 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | C1FEL2 | 3e-97 | C1FEL2_MICCC; Histone-like transcription factor | ||||
STRING | XP_002507332.1 | 5e-98 | (Micromonas sp. RCC299) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2023 | 16 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 3e-67 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Phytozome | 89813 |
Entrez Gene | 8250638 |
Publications ? help Back to Top | |||
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