PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 80246 | ||||||||
Common Name | MICPUN_80246 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Family | MYB | ||||||||
Protein Properties | Length: 88aa MW: 10302.6 Da PI: 8.4948 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 2 | 45 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l +v+++G + W++I+ +m + +kqc+ rwq+yl 80246 2 WTDEEDEQLRALVAEYGVKKWALISTKMA-AKGAKQCRRRWQNYL 45 *****************************.999***********7 PP | |||||||
2 | Myb_DNA-binding | 42.6 | 1.4e-13 | 52 | 88 | 2 | 40 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 g W++eEd +l+++++++G++ W+ Iar++ gRt++ + 80246 52 GGWSEEEDRILLEGHRLHGNK-WTEIARMVT-GRTDNAV 88 56*******************.********9.****975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.975 | 1 | 49 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-26 | 1 | 88 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.4E-17 | 2 | 59 | No hit | No description |
SMART | SM00717 | 1.4E-10 | 2 | 47 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-23 | 2 | 52 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.42E-13 | 2 | 45 | No hit | No description |
SMART | SM00717 | 3.9E-4 | 50 | 88 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.024 | 50 | 88 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-17 | 53 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.72E-8 | 54 | 88 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009553 | Biological Process | embryo sac development | ||||
GO:0010052 | Biological Process | guard cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MWTDEEDEQL RALVAEYGVK KWALISTKMA AKGAKQCRRR WQNYLNNDIK QGGWSEEEDR 60 ILLEGHRLHG NKWTEIARMV TGRTDNAV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-31 | 2 | 88 | 10 | 96 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00259 | DAP | Transfer from AT2G02820 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP001324 | 1e-146 | CP001324.1 Micromonas sp. RCC299 chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002501194.1 | 4e-59 | predicted protein, partial | ||||
Swissprot | P48972 | 3e-29 | MYBB_MOUSE; Myb-related protein B | ||||
TrEMBL | C1E342 | 1e-57 | C1E342_MICCC; Uncharacterized protein (Fragment) | ||||
STRING | XP_002501194.1 | 2e-58 | (Micromonas sp. RCC299) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02820.2 | 1e-31 | myb domain protein 88 |
Link Out ? help Back to Top | |
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Phytozome | 80246 |
Entrez Gene | 8242383 |
Publications ? help Back to Top | |||
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