PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 74650 | ||||||||
Common Name | MICPUN_74650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Family | MYB | ||||||||
Protein Properties | Length: 95aa MW: 10834.5 Da PI: 11.1031 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.2 | 6.9e-12 | 1 | 40 | 7 | 47 |
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +Ed +l +v +G ++W+ Ia+ ++ R+ k+c++rw + 74650 1 QEDARLSMLVMTHGARNWSFIAEGIP-SRSSKSCRLRWCNQ 40 69************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 45.9 | 1.3e-14 | 47 | 89 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r++++ Ed + a k+lG++ W++Ia+ ++ gRt++ +k++++ 74650 47 RDNFSDAEDRTIMAAYKKLGNR-WASIAKLLP-GRTDNAVKNHLH 89 789*******************.*********.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 2.09E-9 | 1 | 39 | No hit | No description |
PROSITE profile | PS51294 | 13.717 | 1 | 41 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-4 | 1 | 43 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 7.2E-14 | 1 | 56 | No hit | No description |
SuperFamily | SSF46689 | 1.46E-23 | 1 | 87 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.2E-20 | 1 | 48 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.438 | 42 | 95 | IPR017930 | Myb domain |
SMART | SM00717 | 5.8E-10 | 46 | 94 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-18 | 49 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.59E-8 | 49 | 87 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
QEDARLSMLV MTHGARNWSF IAEGIPSRSS KSCRLRWCNQ LDPALRRDNF SDAEDRTIMA 60 AYKKLGNRWA SIAKLLPGRT DNAVKNHLHA KLRAK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-31 | 1 | 95 | 10 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-30 | 1 | 95 | 64 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-30 | 1 | 95 | 64 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-31 | 1 | 95 | 10 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-31 | 1 | 95 | 10 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP001323 | 1e-158 | CP001323.1 Micromonas sp. RCC299 chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002500273.1 | 3e-65 | predicted protein, partial | ||||
Swissprot | Q42575 | 1e-35 | MYB1_ARATH; Transcription factor MYB1 | ||||
TrEMBL | C1DZ20 | 6e-64 | C1DZ20_MICCC; Uncharacterized protein (Fragment) | ||||
STRING | XP_002500273.1 | 1e-64 | (Micromonas sp. RCC299) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 7e-39 | myb domain protein 109 |
Link Out ? help Back to Top | |
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Phytozome | 74650 |
Entrez Gene | 8240975 |
Publications ? help Back to Top | |||
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