PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 73784 | ||||||||
Common Name | MICPUN_73784 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Family | MYB | ||||||||
Protein Properties | Length: 98aa MW: 11784.5 Da PI: 11.2697 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.1 | 1.5e-16 | 1 | 44 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT +Ed +l ++v ++G + W+ Ia++m gR +kqc++rw+++l 73784 1 WTVQEDNQLRRLVDEHGHRKWSFIASKMS-GRRGKQCRDRWLNHL 44 *****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 6.1e-17 | 50 | 92 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg WT+eE+ +lv+++++lG++ W++ a+ ++ gR ++ +k++w+ 73784 50 RGEWTQEEERILVEGHRMLGTR-WAALAKLLP-GRPENAIKNHWH 92 89********************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.043 | 1 | 48 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.61E-28 | 1 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.78E-12 | 1 | 44 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-26 | 1 | 51 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.5E-12 | 1 | 46 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 6.7E-19 | 1 | 58 | No hit | No description |
SMART | SM00717 | 3.0E-14 | 49 | 97 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.465 | 49 | 98 | IPR017930 | Myb domain |
CDD | cd00167 | 6.08E-9 | 52 | 95 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.5E-21 | 52 | 97 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
WTVQEDNQLR RLVDEHGHRK WSFIASKMSG RRGKQCRDRW LNHLKPDIRR GEWTQEEERI 60 LVEGHRMLGT RWAALAKLLP GRPENAIKNH WHATLRCK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-37 | 1 | 98 | 10 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP001333 | 1e-163 | CP001333.1 Micromonas sp. RCC299 chromosome 15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002506578.1 | 1e-66 | predicted protein, partial | ||||
Swissprot | Q9FIM4 | 1e-37 | MY119_ARATH; Transcription factor MYB119 | ||||
TrEMBL | C1EIC3 | 2e-65 | C1EIC3_MICCC; Uncharacterized protein (Fragment) | ||||
STRING | XP_002506578.1 | 4e-66 | (Micromonas sp. RCC299) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 5e-40 | myb domain protein 119 |
Link Out ? help Back to Top | |
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Phytozome | 73784 |
Entrez Gene | 8249509 |
Publications ? help Back to Top | |||
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