PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 73784
Common NameMICPUN_73784
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family MYB
Protein Properties Length: 98aa    MW: 11784.5 Da    PI: 11.2697
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
73784genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-16144448
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     WT +Ed +l ++v ++G + W+ Ia++m  gR +kqc++rw+++l
            73784  1 WTVQEDNQLRRLVDEHGHRKWSFIASKMS-GRRGKQCRDRWLNHL 44
                     *****************************.*************97 PP

2Myb_DNA-binding53.46.1e-175092145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     rg WT+eE+ +lv+++++lG++ W++ a+ ++ gR ++ +k++w+
            73784 50 RGEWTQEEERILVEGHRMLGTR-WAALAKLLP-GRPENAIKNHWH 92
                     89********************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.043148IPR017930Myb domain
SuperFamilySSF466891.61E-28191IPR009057Homeodomain-like
CDDcd001673.78E-12144No hitNo description
Gene3DG3DSA:1.10.10.601.4E-26151IPR009057Homeodomain-like
SMARTSM007178.5E-12146IPR001005SANT/Myb domain
PfamPF139216.7E-19158No hitNo description
SMARTSM007173.0E-144997IPR001005SANT/Myb domain
PROSITE profilePS5129419.4654998IPR017930Myb domain
CDDcd001676.08E-95295No hitNo description
Gene3DG3DSA:1.10.10.607.5E-215297IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
WTVQEDNQLR RLVDEHGHRK WSFIASKMSG RRGKQCRDRW LNHLKPDIRR GEWTQEEERI  60
LVEGHRMLGT RWAALAKLLP GRPENAIKNH WHATLRCK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-3719810107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013331e-163CP001333.1 Micromonas sp. RCC299 chromosome 15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002506578.11e-66predicted protein, partial
SwissprotQ9FIM41e-37MY119_ARATH; Transcription factor MYB119
TrEMBLC1EIC32e-65C1EIC3_MICCC; Uncharacterized protein (Fragment)
STRINGXP_002506578.14e-66(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.15e-40myb domain protein 119
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]