PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 73264 | ||||||||
Common Name | MICPUN_73264 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 96aa MW: 10817.3 Da PI: 11.173 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.2 | 9.1e-14 | 1 | 42 | 6 | 47 |
HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqky 47 ++Ed ll + +++lGg+ +W++Ia+ ++ gR+ k+c++rw + 73264 1 PQEDALLREQIQKLGGPgNWTAIAEALP-GRSSKSCRLRWCNQ 42 68**************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 55 | 1.8e-17 | 49 | 93 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++Ed ++ a++ +G++ W+ I+r ++ gRt++q+k+r+++ 73264 49 RGPFTEDEDRAILAAHAIHGNK-WAVISRSIP-GRTDNQVKNRFNST 93 89********************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.309 | 1 | 43 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-6 | 1 | 45 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-12 | 1 | 42 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.73E-10 | 1 | 41 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-22 | 1 | 50 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.29E-26 | 23 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.968 | 44 | 96 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-16 | 48 | 96 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 49 | 93 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-23 | 51 | 96 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.54E-12 | 51 | 94 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 96 aa Download sequence Send to blast |
PQEDALLREQ IQKLGGPGNW TAIAEALPGR SSKSCRLRWC NQLNPMVKRG PFTEDEDRAI 60 LAAHAIHGNK WAVISRSIPG RTDNQVKNRF NSTLRR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-29 | 2 | 96 | 33 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP001326 | 4e-67 | CP001326.1 Micromonas sp. RCC299 chromosome 5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002502026.1 | 3e-66 | predicted protein, partial | ||||
Swissprot | Q42575 | 6e-37 | MYB1_ARATH; Transcription factor MYB1 | ||||
TrEMBL | C1E5N2 | 6e-65 | C1E5N2_MICCC; Uncharacterized protein (Fragment) | ||||
STRING | XP_002502026.1 | 1e-65 | (Micromonas sp. RCC299) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G55730.1 | 1e-40 | myb domain protein 109 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 73264 |
Entrez Gene | 8243313 |
Publications ? help Back to Top | |||
---|---|---|---|
|