PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 64870
Common NameMICPUN_64870
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family M-type_MADS
Protein Properties Length: 594aa    MW: 60783.1 Da    PI: 10.5093
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
64870genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.91.8e-253686151
            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
            +ri +++nrqvtf+kR+ng++KKA ELSvLCd ++a+iif s++kl+ yss
   64870 36 ERIADERNRQVTFTKRKNGLMKKAMELSVLCDCQIALIIFNSNNKLFQYSS 86
            699**********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.2E-332887IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.2022888IPR002100Transcription factor, MADS-box
CDDcd002651.15E-332997No hitNo description
SuperFamilySSF554556.41E-292999IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003084IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-243050IPR002100Transcription factor, MADS-box
PfamPF003193.3E-243784IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-245065IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-246586IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0010094Biological Processspecification of carpel identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048455Biological Processstamen formation
GO:0048459Biological Processfloral whorl structural organization
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048509Biological Processregulation of meristem development
GO:0048833Biological Processspecification of floral organ number
GO:0080060Biological Processintegument development
GO:0080112Biological Processseed growth
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MGNPPKGKAS VKSAGSTPSP EQKKPTALGR KKIRIERIAD ERNRQVTFTK RKNGLMKKAM  60
ELSVLCDCQI ALIIFNSNNK LFQYSSGDIN QVLTRFKGDT VGPHEKRNNK DLFNQHFKNQ  120
PRNPNGPPNP MDDPDDEDSD SDEPPTKKGK SKTAAAKANA KSNAKSGGKS GHVTVNKHQS  180
AKDNAKKRKH AALAAAVAAR KAAERAASFA AQFSDDSMDE DELDAANGVA SLTPTSERTP  240
TSLDGSGRFG AGALAAVEAA RRIASQSMGG GSSGDRAGQF LQSLNAATDA LNASGQFGAS  300
GGLLNLSGDG KASPGGFFGG LAGAGMTPTG LSFGGLPSPG SGGLPADLGS MELPSPVARA  360
LQAGAGNVSL NLSVGDLNTT RFGKESNEKA SNEKADRARR SRVEPKDLSI QIPENKLKPI  420
TVGNGKALNE SASGHSPGPL TSLLQQGAAG QLSASQKSGS AGGVKLERDI LARSADKARD  480
DDKQQLGDGG GSFSLPKAEG SDRPTPDRMG AADATNETDD DFLNSGGEAG RGERRGGGGG  540
GGGGGRRKGG SDSVGKLEPP APDPKAGSKR TRSASVSDPA PSSARSTRSR RGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-3328122194MEF2 CHIMERA
6byy_B2e-3328122194MEF2 CHIMERA
6byy_C2e-3328122194MEF2 CHIMERA
6byy_D2e-3328122194MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1534545RGGGGGGGGGGR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013340.0CP001334.1 Micromonas sp. RCC299 chromosome 16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002506896.10.0predicted protein
TrEMBLC1EJB00.0C1EJB0_MICCC; Uncharacterized protein
STRINGXP_002506896.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP36561314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.12e-21MIKC_MADS family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]