PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 64742 | ||||||||
Common Name | MICPUN_64742 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Family | AP2 | ||||||||
Protein Properties | Length: 715aa MW: 74314.6 Da PI: 10.2672 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.7 | 4.5e-11 | 219 | 267 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GV+++k++gr++A+I+d r ++ +lg+f a Aa a+++ + k++g 64742 219 RFRGVTRYKRTGRYEAHIWD------RgRQKHLGSFAAATAAASAYDKTAIKFRG 267 59******************......55**********************99987 PP | |||||||
2 | AP2 | 30 | 1.3e-09 | 599 | 648 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr...krfslgkfgtaeeAakaaiaarkkl 53 s +kGV++++++grW+A+ + r k+ +lg f+ + eAa+a + + +k+ 64742 599 SSHKGVTRHRRSGRWEAHMWS------RelgKQLYLGGFDAECEAARAFDVCSLKK 648 579***************888......2245**********55*****99998775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.5E-18 | 219 | 282 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.936 | 219 | 276 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.84E-11 | 219 | 277 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-11 | 219 | 277 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.81E-12 | 599 | 647 | No hit | No description |
SMART | SM00380 | 3.9E-7 | 600 | 687 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 13.38 | 600 | 669 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-8 | 600 | 650 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.1E-6 | 600 | 649 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.6E-8 | 601 | 647 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 715 aa Download sequence Send to blast |
MSLEPAELSP REAAELILSL GGGPAAGRAR APAPPHDTRA PRVKAKAKKD FPRGGGGGGG 60 GGERATGTPR RPPGAPRPAR PRTDEPIDPS SGGSMKRSRL DLTEDLTRDA TPPLHPPAPS 120 PPVASRPDEP ERKRQRRAPV RIQPDVEDDA RMGNRGVLGL ERLSREQQRE FWRLAARTGE 180 SAREEGEAKL SKEEAKGEHA DADQSTKVAG VDPTRARGRF RGVTRYKRTG RYEAHIWDRG 240 RQKHLGSFAA ATAAASAYDK TAIKFRGWDA SPLNFPAESY AADDEFRRDL ATLTKGEFVA 300 KTCAAGRAGR RAGGGGGGEG PEAPSPPPRS TPPASGLSPG GLTLADALVR AQMLEDPGCA 360 PKPQHVLTLA PPGATAETSH SGSESESGGS GSGAGSGTNS DKSGADSDSR DPRPLDPSRI 420 VAVDPPIGST PVGTPSAPWV GTPSANPPPR RADVLALARA FIVGGVVTAE VATNFPRELL 480 AAASRELELA NARGRAVGCR GGCRGGADDD GAVDGEDANA RLLNKATRAA AKAMADSTVD 540 VAGAPAADPP APPATSAPPS APHRHPPSPP GPTRASPCTP AHPPRARSNA GFKRGDTSSS 600 HKGVTRHRRS GRWEAHMWSR ELGKQLYLGG FDAECEAARA FDVCSLKKWR DERGASSAAA 660 AAAATGNFPF GTSKAPGLNF PPGEYRDLVP ALDSMSLEGV IAAVRQGKLR EHRA* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP001334 | 0.0 | CP001334.1 Micromonas sp. RCC299 chromosome 16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002506836.1 | 0.0 | predicted protein | ||||
TrEMBL | C1EIY2 | 0.0 | C1EIY2_MICCC; Uncharacterized protein | ||||
STRING | XP_002506836.1 | 0.0 | (Micromonas sp. RCC299) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G39250.1 | 8e-16 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | 64742 |
Entrez Gene | 8249614 |
Publications ? help Back to Top | |||
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