PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

64543

Common Name

MICPUN_64543

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

Protein Properties

Length: 279aa MW: 29255.4 Da PI: 10.5832

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
64543	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.8e-05	172	193	1	22
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 ++C C+k F+++ +L+ H r 64543 172 HRCDVCDKDFTSHAQLEEHRRG 193 79*****************995 PP
2	zf-C2H2	10.7	0.0016	238	255	3	20
ETTTTEEESSHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHi 20 C C k F++ +L+ H 64543 238 CALCRKAFTSTAQLEEHR 255 99***************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.24E-8	166	203	No hit	No description
SMART	SM00355	0.009	172	196	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	8.8E-4	172	192	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	172	201	IPR007087	Zinc finger, C2H2
Pfam	PF12171	4.3E-7	172	197	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	174	196	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.33E-7	227	265	No hit	No description
SMART	SM00355	57	236	260	IPR015880	Zinc finger, C2H2-like
Pfam	PF12874	8.3E-4	237	260	No hit	No description
PROSITE pattern	PS00028	0	238	260	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MSLNDIDAQL AELKARLGGL DSEASDDESG GGAREESRDN DPKRKSKKEK KSKKSKKERK 60 EKKAKRARSS SSESASDGGE DSDSELVPIA PLPASCLPEH NAYAAKSVGK RRKQSKAGSP 120 ATATAAAAWA RGDGTVDAAD ASRAGASDAS PSAQRPAILE LLEKRREKRA EHRCDVCDKD 180 FTSHAQLEEH RRGKAHRSRA ASHGGGAGRG GRGGGGRGGG GPVRPAPGPR PPPGVPHCAL 240 CRKAFTSTAQ LEEHRGGKWH KARASGELPP SRKPYNAT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	41	59	PKRKSKKEKKSKKSKKERK
2	208	216	RGGRGGGGR
3	214	220	GGRGGGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001333	0.0	CP001333.1 Micromonas sp. RCC299 chromosome 15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002506408.1	0.0	predicted protein
TrEMBL	C1EIE1	0.0	C1EIE1_MICCC; Uncharacterized protein
STRING	XP_002506408.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP8441	3	3

Link Out ? help Back to Top
Phytozome	64543
Entrez Gene	8249340

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]