PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

63995

Common Name

MICPUN_63995

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

CO-like

Protein Properties

Length: 499aa MW: 53464.1 Da PI: 8.5832

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
63995	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.3	6.5e-08	73	117	4	42
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C++++ ++ +fC+ ++ +lC +C ++H+ H+++p+ 63995 73 ATCENCHTAPAAWFCHHDGAYLCTSCDHSIHNAnklamrHERIPI 117 69*****************************77999999999886 PP
2	CCT	55.6	1.9e-19	326	370	1	44
CCT 1 ReaallRYkeKrktRkF.eKkirYesRKavAesRpRvKGrFvkqa 44 R+a+l+RY+ Kr R KkirYe+RK++A++RpR+KGrF+k + 63995 326 RQAQLQRYRAKRLARHLgHKKIRYECRKTLADNRPRIKGRFAKVN 370 99***********9956*********************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	5.0E-6	70	117	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	11.277	70	117	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.1E-6	72	117	IPR000315	B-box-type zinc finger
CDD	cd00021	4.20E-6	75	117	No hit	No description
Pfam	PF06203	3.6E-17	326	369	IPR010402	CCT domain
PROSITE profile	PS51017	12.431	326	369	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MSLQPMRRRD REGVHAVTRT GFATQEKKNA NEFLRVKANE TNAAKVTENG AGDVLETHEH 60 AEFESVDMSH NHATCENCHT APAAWFCHHD GAYLCTSCDH SIHNANKLAM RHERIPIEQK 120 LANDAQCRPA TPAFEGALMG TARSSGNGKT GTTAGFDPSS PQHGHHGGND MDWLMGGGGL 180 DDPLSSLMTL EQEGNSSGGH FNLGDDLFGM PAANPSGMGG GYGQHQGGLG AVKEEPVHAL 240 FRGAHAEGNG DSYAGHAHHR QDNSSGSSDQ STSTDLINGR GHSVNGRASI NQHQMGGQHQ 300 ARAFEGGLQL REETVLTRPF AQSALRQAQL QRYRAKRLAR HLGHKKIRYE CRKTLADNRP 360 RIKGRFAKVN SDADLAGMVT AQSCPDLSAM HRAAKLDEER AKDSSSDSTK QQTTAKVKAE 420 PRRSRLSDGS DDTVANAKQS NGSPKKASPS GKGGKKATAS AAEEVFKKVG SLRTGGKPMM 480 PYTQSEVSLV ALDREGVW*

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MSLQPMRRRD REGVHAVTRT GFATQEKKNA NEFLRVKANE TNAAKVTENG AGDVLETHEH  60
AEFESVDMSH NHATCENCHT APAAWFCHHD GAYLCTSCDH SIHNANKLAM RHERIPIEQK  120
LANDAQCRPA TPAFEGALMG TARSSGNGKT GTTAGFDPSS PQHGHHGGND MDWLMGGGGL  180
DDPLSSLMTL EQEGNSSGGH FNLGDDLFGM PAANPSGMGG GYGQHQGGLG AVKEEPVHAL  240
FRGAHAEGNG DSYAGHAHHR QDNSSGSSDQ STSTDLINGR GHSVNGRASI NQHQMGGQHQ  300
ARAFEGGLQL REETVLTRPF AQSALRQAQL QRYRAKRLAR HLGHKKIRYE CRKTLADNRP  360
RIKGRFAKVN SDADLAGMVT AQSCPDLSAM HRAAKLDEER AKDSSSDSTK QQTTAKVKAE  420
PRRSRLSDGS DDTVANAKQS NGSPKKASPS GKGGKKATAS AAEEVFKKVG SLRTGGKPMM  480
PYTQSEVSLV ALDREGVW*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001332	0.0	CP001332.1 Micromonas sp. RCC299 chromosome 14, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002506129.1	0.0	hypothetical protein MICPUN_63995
TrEMBL	C1EGU3	0.0	C1EGU3_MICCC; Uncharacterized protein
STRING	XP_002506129.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP7410	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15850.1	3e-13	CONSTANS-like 1

Link Out ? help Back to Top
Phytozome	63995
Entrez Gene	8248859

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]