PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 63899
Common NameMICPUN_63899
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family C3H
Protein Properties Length: 568aa    MW: 59755.6 Da    PI: 7.6176
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
63899genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH277.9e-09358380225
              -S---SGGGGTS--TTTTT-SS-S CS
  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
              +t++Cr+++  G C++Gd C F H
    63899 358 GTRPCRYWQL-GKCRRGDACDFVH 380
              8*********.************* PP
2zf-CCCH18.92.7e-06412432526
              --SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
              +Crff+r G Ck G rC FaH+
    63899 412 PCRFFLR-GRCKSGRRCAFAHD 432
              8******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF104534.1E-8220255IPR019496Nuclear fragile X mental retardation-interacting protein 1, conserved domain
SMARTSM003568.3E-5356382IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.849356383IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-6357380IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5359380IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-6359380IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5407433IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.469407434IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6409432IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-6412434IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MNPPQGAGFP PHGPHGQGSH PHARTPAGAY QMMYVPVVQY PGQQQQQWTP HGGGTVPMMM  60
AQGQVMMAVP QGAWGAPAAA GWAAQMQQHY GQPPQPPPQQ PTQPTQQQWF GTVGGGPPPP  120
PPPPPASDVH PAPSSPSTNP PGGKRNAHRR GKNRGRGGKP ADHPSQPRPD ADETAAPPSD  180
SVPAQPRSES APAFKREKGV TFPTVDEIPA VKQVDVASLP EDVRRYREER AKNWPSNAVV  240
ERRRAEAEER AARGQLSRDD DESSSSAAAA ARRAALREIL ARQRELGHFE ASEEIGDVGG  300
GAGDEEAAGS AAAAAAGGGG NRKGKGRGGG RDPGAGGDDS APAKRQRRDA GGAGGRQGTR  360
PCRYWQLGKC RRGDACDFVH AGDAGGNRAG ASTGAETCPT ISPTNAATNA TPCRFFLRGR  420
CKSGRRCAFA HDESAREKAK KDKKAKASSS NAAAGSQTLL RKLLAREVRA DRSRLLQVFR  480
FLVNNDFLRA HDPSGDPGNL WMFPWVDDPV RSPKETLRAL AAEAARGGDG DGDGEEPSLG  540
EEPSLEQDEE TDGEADAEAG LNEEEDV*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013320.0CP001332.1 Micromonas sp. RCC299 chromosome 14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002506084.10.0predicted protein
TrEMBLC1EGK00.0C1EGK0_MICCC; Uncharacterized protein
STRINGXP_002506084.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP578177
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]