PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

63537

Common Name

MICPUN_63537

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

HB-PHD

Protein Properties

Length: 505aa MW: 55481.8 Da PI: 6.3228

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
63537	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	46.1	8.2e-15	440	488	6	54
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 +f+++ +Le+ F+ n+ ps++e++ + ++gLt+ qVkvWFqNrR 63537 440 KFSDSVRAALEASFNANNFPSHHEMASIGGSIGLTDHQVKVWFQNRRRP 488 6999999****************************************65 PP
2	PHD	40.7	5.3e-14	160	211	1	50
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSSTBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpegewlCeeCke 50 +C+ C + +++e++++ Cdg C+++fH+ C+ ++ + +e+p+ ewlC+ C+ 63537 160 VCARCADgdATDENDILICDGyCDRAFHQRCVVPPVKADEIPD-EWLCPLCDA 211 599999987778******77***********999997.*****86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	1.04E-13	151	216	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	2.7E-13	157	211	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	10.54	158	212	IPR019787	Zinc finger, PHD-finger
CDD	cd15504	1.25E-22	160	209	No hit	No description
SMART	SM00249	5.0E-9	160	210	IPR001965	Zinc finger, PHD-type
Pfam	PF00628	5.3E-11	161	211	IPR019787	Zinc finger, PHD-finger
PROSITE pattern	PS01359	0	161	209	IPR019786	Zinc finger, PHD-type, conserved site
PROSITE pattern	PS00202	0	200	210	IPR018527	Rubredoxin, iron-binding site
Gene3D	G3DSA:1.10.10.60	3.2E-15	423	486	IPR009057	Homeodomain-like
CDD	cd00086	5.14E-12	430	487	No hit	No description
SMART	SM00389	2.4E-12	430	496	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.27E-13	437	490	IPR009057	Homeodomain-like
Pfam	PF00046	3.6E-12	440	487	IPR001356	Homeobox domain
PROSITE profile	PS50071	13.783	441	492	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence Send to blast
MRTPPRRASR NSGSGFGKRI KVAKKPFSPE PAEKKRKENK SASAGSRDGD GDGKKSRRGR 60 ATGQGRRRNG KAKDDEPVNK LSTIRREQHH IDAYEMDGWK GASREKLRPA DEIRKSQVKI 120 FNCKLKVRDM FRDIDMDTGE VSFRDRIEED TGEVDVEDVV CARCADGDAT DENDILICDG 180 YCDRAFHQRC VVPPVKADEI PDEWLCPLCD ARVDCFYTLN ADFDLELDAA DASWRDVFPT 240 EAELDSKKEG PGQENERRAD KGKGLLDEDW GSDESGDEDF AEGADGDDGD DDDDEPLSGS 300 ARSGSDSDSD GDSGERRRVR DAMNAEAEVC VGKRRRTAVD YRKLNDEMFG EGEAFEGEAE 360 DERVGGWGPS SPGRSKDAAA KRGRRGEGRS RRRSSATDAE GRGAAGGSKV RVNSKPSTPA 420 SPRRKQSPAK KRTGAPPPKK FSDSVRAALE ASFNANNFPS HHEMASIGGS IGLTDHQVKV 480 WFQNRRRPKK PRAAEQNGTP AKSP*

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence Send to blast

MRTPPRRASR NSGSGFGKRI KVAKKPFSPE PAEKKRKENK SASAGSRDGD GDGKKSRRGR  60
ATGQGRRRNG KAKDDEPVNK LSTIRREQHH IDAYEMDGWK GASREKLRPA DEIRKSQVKI  120
FNCKLKVRDM FRDIDMDTGE VSFRDRIEED TGEVDVEDVV CARCADGDAT DENDILICDG  180
YCDRAFHQRC VVPPVKADEI PDEWLCPLCD ARVDCFYTLN ADFDLELDAA DASWRDVFPT  240
EAELDSKKEG PGQENERRAD KGKGLLDEDW GSDESGDEDF AEGADGDDGD DDDDEPLSGS  300
ARSGSDSDSD GDSGERRRVR DAMNAEAEVC VGKRRRTAVD YRKLNDEMFG EGEAFEGEAE  360
DERVGGWGPS SPGRSKDAAA KRGRRGEGRS RRRSSATDAE GRGAAGGSKV RVNSKPSTPA  420
SPRRKQSPAK KRTGAPPPKK FSDSVRAALE ASFNANNFPS HHEMASIGGS IGLTDHQVKV  480
WFQNRRRPKK PRAAEQNGTP AKSP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	23	36	KKPFSPEPAEKKRK
2	315	335	RRRVRDAMNAEAEVCVGKRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001331	0.0	CP001331.1 Micromonas sp. RCC299 chromosome 13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002505470.1	0.0	predicted protein
TrEMBL	C1EG75	0.0	C1EG75_MICCC; Uncharacterized protein
STRING	XP_002505470.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3402	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	4e-33	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Link Out ? help Back to Top
Phytozome	63537
Entrez Gene	8248645

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]