PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 63468
Common NameMICPUN_63468
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family AP2
Protein Properties Length: 392aa    MW: 42814.9 Da    PI: 9.2081
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
63468genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.12.9e-15200251155
    AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
            s+y+GV+ +k++grW+A+I++       + k+ +lg ++ +e Aa+a++ a+ k +g
  63468 200 SQYRGVTKHKRSGRWEAHIWVkE-----TgKQMYLGGYDKEEHAAEAYDVAAMKCKG 251
            78*******************33.....25**********************98765 PP
2AP242.71.4e-13298347155
    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
            sg++GV++++ +grW+A+I  p     + k+++lg +  +  Aa+a++ a  +l+g
  63468 298 SGFRGVTQHP-NGRWEARIGMP-----NsKHIYLGLYNEESAAARAYDMALVRLRG 347
            79********.8*********9.....55**********88************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-13200263IPR016177DNA-binding domain
PfamPF008473.9E-10200251IPR001471AP2/ERF domain
CDDcd000183.70E-20200265No hitNo description
SMARTSM003807.8E-26201269IPR001471AP2/ERF domain
PROSITE profilePS5103217.082201263IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-17201264IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-15298355IPR016177DNA-binding domain
CDDcd000189.42E-17298354No hitNo description
PfamPF008473.7E-7298347IPR001471AP2/ERF domain
SMARTSM003806.7E-21299361IPR001471AP2/ERF domain
PROSITE profilePS5103216.595299355IPR001471AP2/ERF domain
PRINTSPR003671.7E-5300311IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-16300355IPR001471AP2/ERF domain
PRINTSPR003671.7E-5337357IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MMSGWDIPSS FLTDEELREF GFADISHDGQ NGPQQTQQTN ETNRMPTELI GLNAAPPTSG  60
SDDNMPKVAW AHGCLEESIA PTNGFTNAIP TTAREQTTHE MGVKRVLKST VVAGTATGSQ  120
ANNKKKRSCR PNPDKTLDKK TRNITNTRKR GLFDNHSSGS ATSRPFLAKE ENGLADIHNL  180
PCVDGEKAIP GGGGEKPRSS QYRGVTKHKR SGRWEAHIWV KETGKQMYLG GYDKEEHAAE  240
AYDVAAMKCK GGKNGRKVKL NFPEAKYTEL SGYMASVSLE ELVMAIRRQS QGFARGSSGF  300
RGVTQHPNGR WEARIGMPNS KHIYLGLYNE ESAAARAYDM ALVRLRGPGA ATNYTLANYK  360
DELMAFEDDK PGGAQLEAKA ACKEEVKNKE A*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013310.0CP001331.1 Micromonas sp. RCC299 chromosome 13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002505682.10.0AP2-like protein
TrEMBLC1EG050.0C1EG05_MICCC; AP2-like protein
STRINGXP_002505682.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.17e-42AP2 family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]