PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 63448 | ||||||||
Common Name | MICPUN_63448 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Family | GATA | ||||||||
Protein Properties | Length: 410aa MW: 44354.1 Da PI: 8.7267 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 23.5 | 8e-08 | 5 | 42 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgp...dgnkt.LCnaCGlyyrkkgl 35 C++Cg kTp WRrg+ g++ LCnaCG ++ +l 63448 5 CASCGGDKTP-WRRGWtvkAGERAlLCNACGQRWSAGRL 42 **********.*****999888878*********87765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 0.006 | 1 | 53 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.0E-6 | 3 | 54 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 4.28E-5 | 3 | 51 | No hit | No description |
CDD | cd00202 | 3.02E-8 | 4 | 59 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MSHACASCGG DKTPWRRGWT VKAGERALLC NACGQRWSAG RLRPPVPSEP PRKKRRSSLP 60 AAAAPVPIAA RVAPPCFSPR ESEPIDDGGK EVDGADAETP RRATRRSLPS GHRRPSAGEP 120 FEGEDLPETF HPTAVPVILR QLGPGRWCRY AAFRERPPIH ERGKRTRTFE LVAEDGTALE 180 AVVGTASASS NHKYRYEVCN GLVSLAMDRM GRPFASPPTP GHLRNARDAC AWLRAVVRES 240 VSADQSFCAA VAAAVAVDAA VRREDLGGTW RALEHALGQN MWRWATDTAG ELAVARLHEM 300 VRRIDEGAGI VRGRNALTAR DAAEIVSELR CVWMRVDGGI NMETLEETGI ARAVAKIASM 360 EGNRAARETV DAASAILKEW RETQAGLVAT LENFLGSEAA HEREVSASR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP001331 | 0.0 | CP001331.1 Micromonas sp. RCC299 chromosome 13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002505423.1 | 0.0 | predicted protein | ||||
TrEMBL | C1EFY5 | 0.0 | C1EFY5_MICCC; Uncharacterized protein | ||||
STRING | XP_002505423.1 | 0.0 | (Micromonas sp. RCC299) |
Link Out ? help Back to Top | |
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Phytozome | 63448 |
Entrez Gene | 8248353 |
Publications ? help Back to Top | |||
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