PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

63313

Common Name

MICPUN_63313

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

MYB_related

Protein Properties

Length: 770aa MW: 82772.1 Da PI: 6.6428

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
63313	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.4	3.4e-13	4	54	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 rg W eE++ l dav+++G g+W++ +r+ + kgRt+ q+k++w+++ 63313 4 RGYWDDEEEQALRDAVQKHGIGSWEK-MRHDPdfkvlKGRTGVQLKDKWRNL 54 899*********************.555555***************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.805	1	59	IPR017930	Myb domain
SMART	SM00717	2.4E-9	3	57	IPR001005	SANT/Myb domain
Pfam	PF00249	6.5E-9	4	54	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-14	4	61	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.62E-14	5	62	IPR009057	Homeodomain-like
CDD	cd11660	7.69E-18	7	56	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 770 aa Download sequence Send to blast
MPFRGYWDDE EEQALRDAVQ KHGIGSWEKM RHDPDFKVLK GRTGVQLKDK WRNLIKFQHL 60 RRGEAESAPH RTGGRGPGPG AKRKKADDGD GKAGKKAKPG AKGTAGKKDD KPGKPGAKGK 120 VKGDYDDEDA FDDDKPGKAS GGKTYGKKQK LGVSADAVST KSEPANPKKR LKAVAALAAV 180 EEHRPPPDLD ALERAMQADA MKIDELRRRR ESAVGEVKDA EKELLAVKTS VEDAEAVYNN 240 VRSQPPGGYH HDHHHDDHHD DAHHDDWDKF LDFGDEGAEG AEGAGAKSPH RQPRHSQGAQ 300 TAGQPRLSEN DPVARAAAAA RMSDPVQSPA AAAAMRDAAN AAVRVASEPV HNPNHRSHLP 360 SLHEAEQFLL QELKKLEAAN ARLMSARAHL EVIDRQLAAA IASAAERSEQ RVAMMRRNPA 420 LGGPVKKTWG GPPGARKIKE EIKEEEDDEE EEEDDDEDDD DAEERKKTTH RRNTAASAGG 480 APGGKVIEDR RFGIYDSRRY RMEGEPAPPD PSSDEDDEPK VGRGRGRAAS AGAGKSVAGT 540 KTQAGRKPPR VTPVSADAVS VGVGGRGRGR GAGAGGGRGR GRGRPPKNQT VPAVDSGSEI 600 VSTKAGTNLK RHQGFQFRGQ NNSGAFVAPS AADAATYIAP SYIRGHHLRW LMKRGRTRNA 660 VARPASGPTS WAAMCSFALW KPAELKAAIA REKEMEKEKE ANATDEEESD EDEDDDGGGG 720 YDSEESGPIG SGHAHIDFDA FGYEMGDDGD MGMIMDMDFG EDFHPGMSP*

Sequence ? help Back to Top

Protein Sequence Length: 770 aa Download sequence Send to blast

MPFRGYWDDE EEQALRDAVQ KHGIGSWEKM RHDPDFKVLK GRTGVQLKDK WRNLIKFQHL  60
RRGEAESAPH RTGGRGPGPG AKRKKADDGD GKAGKKAKPG AKGTAGKKDD KPGKPGAKGK  120
VKGDYDDEDA FDDDKPGKAS GGKTYGKKQK LGVSADAVST KSEPANPKKR LKAVAALAAV  180
EEHRPPPDLD ALERAMQADA MKIDELRRRR ESAVGEVKDA EKELLAVKTS VEDAEAVYNN  240
VRSQPPGGYH HDHHHDDHHD DAHHDDWDKF LDFGDEGAEG AEGAGAKSPH RQPRHSQGAQ  300
TAGQPRLSEN DPVARAAAAA RMSDPVQSPA AAAAMRDAAN AAVRVASEPV HNPNHRSHLP  360
SLHEAEQFLL QELKKLEAAN ARLMSARAHL EVIDRQLAAA IASAAERSEQ RVAMMRRNPA  420
LGGPVKKTWG GPPGARKIKE EIKEEEDDEE EEEDDDEDDD DAEERKKTTH RRNTAASAGG  480
APGGKVIEDR RFGIYDSRRY RMEGEPAPPD PSSDEDDEPK VGRGRGRAAS AGAGKSVAGT  540
KTQAGRKPPR VTPVSADAVS VGVGGRGRGR GAGAGGGRGR GRGRPPKNQT VPAVDSGSEI  600
VSTKAGTNLK RHQGFQFRGQ NNSGAFVAPS AADAATYIAP SYIRGHHLRW LMKRGRTRNA  660
VARPASGPTS WAAMCSFALW KPAELKAAIA REKEMEKEKE ANATDEEESD EDEDDDGGGG  720
YDSEESGPIG SGHAHIDFDA FGYEMGDDGD MGMIMDMDFG EDFHPGMSP*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001577	0.0	CP001577.1 Micromonas sp. RCC299 chromosome 12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002509187.1	0.0	predicted protein
TrEMBL	C1FIK8	0.0	C1FIK8_MICCC; Uncharacterized protein
STRING	XP_002509187.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4131	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49850.1	1e-09	telomere repeat binding factor 3

Link Out ? help Back to Top
Phytozome	63313
Entrez Gene	8247814

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]