PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 62865
Common NameMICPUN_62865
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family NF-YC
Protein Properties Length: 311aa    MW: 33783 Da    PI: 6.7932
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
62865genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC174.31.3e-541332361101
  NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101
            ql++fw++q   ie+ +dfknh+lPlarikki+k+dedv+mis+eaPvl++kace+fileltlrsw+h+eenkrrtl+++diaaa+t+tdifdflvdivprd+ 
  62865 133 QLRMFWQQQmqeIESGSDFKNHQLPLARIKKIMKSDEDVRMISSEAPVLFAKACEMFILELTLRSWIHSEENKRRTLQRNDIAAAITKTDIFDFLVDIVPRDDF 236
            89******977778899************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.69E-33120227IPR009072Histone-fold
PfamPF008081.5E-21155218IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.2E-37156233IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEAVSGRAPR FGLNESPSTA CIASVNSFTR LLDPCSTPSN DPKLSPASHI MQQQGGGQGG  60
QGGPPGAHGG PPAGMPMIYG QPYGQFPQGA PHPGDPNAQQ QWQQQARAAQ LQQAQLQAYH  120
MQSHQVNQHH QQQLRMFWQQ QMQEIESGSD FKNHQLPLAR IKKIMKSDED VRMISSEAPV  180
LFAKACEMFI LELTLRSWIH SEENKRRTLQ RNDIAAAITK TDIFDFLVDI VPRDDFKEDG  240
MNVPRAPPAA VALGAPGGDG QGAGGTGAVP AVPYNPGMYY MQPPPGTMAG GQWPPQMSQD  300
PNQYQMPPKQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B4e-54141233395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205211RRTLQRN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0015770.0CP001577.1 Micromonas sp. RCC299 chromosome 12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002509147.10.0predicted protein
TrEMBLC1FJU20.0C1FJU2_MICCC; Uncharacterized protein
STRINGXP_002509147.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP21951616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.28e-58nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]