PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 62569
Common NameMICPUN_62569
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family Dof
Protein Properties Length: 581aa    MW: 57409.2 Da    PI: 9.2809
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
62569genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1153.2e-36153210360
  zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
             e +++cprC s++tkfCyynny+++qPryfC++C+ryWt+GG lrnvPvG+grrknk+
   62569 153 EGTVSCPRCASEETKFCYYNNYNVKQPRYFCRGCQRYWTAGGMLRNVPVGAGRRKNKN 210
             56789***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-22148209IPR003851Zinc finger, Dof-type
PfamPF027019.0E-31155210IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.447156210IPR003851Zinc finger, Dof-type
PROSITE patternPS013610158194IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:1902455Biological Processnegative regulation of stem cell population maintenance
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MAPASKAEGS ARGRTAAKAE AGANTNTQYP IVRKDAGKND ANLGLDAILA AAAEELRSSS  60
GSADGSEDEK KKGSDKGKKG DKGSNGKDGK GKDASARKSG RDAGKGDKAG KPGSGKDSDA  120
KAKVKAKDAK TEEEEEKEVE LEANGKPKLP RPEGTVSCPR CASEETKFCY YNNYNVKQPR  180
YFCRGCQRYW TAGGMLRNVP VGAGRRKNKN GVNGSGDNSQ AAGAAAFAAL AASAAANGRG  240
RVGALGGLTE AAMHAAAAAL GKRERRDGSS DGSATEAEGD DSAYRLAAAG SGAWPMPFGA  300
VPSSSGGGRG GSPGEGSGAG EGSGAGAAPD YGAMFAAMSG GMPGYNPFAA MQAAAAMQAA  360
SSGSAAGGWD AAAMQQAVAA QMTAFMQGAT AQQPSAEQQQ QQAAAAAQQA FAAAMAARYG  420
GMNPFANPYS NPGSPRASMA DSGSAPAPAA ASAGSVPAYP RATEQPPATS VTNGAQPASS  480
AAPTTSSAPP GFFPPAAAAG APNWASMMAM MGPAMAAMQA QHAPNSFGGM DPAQMQQIAA  540
AISAGYNPYA APPAAEGKGA AADAPDAKRF KVEDRAGHAG *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013300.0CP001330.1 Micromonas sp. RCC299 chromosome 11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002505250.10.0dof-like transcription factor
TrEMBLC1EEB90.0C1EEB9_MICCC; Dof-like transcription factor
STRINGXP_002505250.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP46551111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29160.13e-29Dof family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]