PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 62431 | ||||||||
Common Name | MICPUN_62431 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Family | HB-other | ||||||||
Protein Properties | Length: 137aa MW: 16050.3 Da PI: 8.3257 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.3 | 2.2e-07 | 87 | 131 | 12 | 55 |
HHHHHHHHHHSSS--HHHHHHHHHHCTS-H.HHHHHHHHHHHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLte.rqVkvWFqNrRake 55 + L++++e+++yp++e++eeLA++ g ++ +++ ++F+N k+ 62431 87 FKKLKAYYEEEPYPTQERMEELAEEFGAPDwTKIENFFKNMQLKH 131 578***********************8876589999999987776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00086 | 1.10E-5 | 83 | 133 | No hit | No description |
SuperFamily | SSF46689 | 6.42E-6 | 86 | 134 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.6E-5 | 87 | 131 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-6 | 87 | 126 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.535 | 90 | 134 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MDPTAPSITF FDKDTGKGRA TYIGSLQPAR MFPPTVGIWF TNQGDEVCAR IDPRRSRDTP 60 RPRPIRCPRI CPEICFPTHP HSRRQVFKKL KAYYEEEPYP TQERMEELAE EFGAPDWTKI 120 ENFFKNMQLK HQEQFQ* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP001330 | 0.0 | CP001330.1 Micromonas sp. RCC299 chromosome 11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002505185.1 | 2e-98 | predicted protein | ||||
TrEMBL | C1EDY2 | 5e-97 | C1EDY2_MICCC; Uncharacterized protein | ||||
STRING | XP_002505185.1 | 8e-98 | (Micromonas sp. RCC299) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP12965 | 3 | 3 |
Link Out ? help Back to Top | |
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Phytozome | 62431 |
Entrez Gene | 8247607 |
Publications ? help Back to Top | |||
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