PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 62285
Common NameMICPUN_62285
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family TALE
Protein Properties Length: 471aa    MW: 51206.6 Da    PI: 7.4261
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
62285genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.12.2e-063994302354
               SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
  Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRak 54 
               +yps+++++ L k  gL+++q+ +WF N+R +
     62285 399 PYPSEDAKRALMKLAGLNQTQINNWFINQRKR 430
               8*****************************88 PP
2ELK22.33e-08351372122
    ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
            +L++ L+rKY++++  Lk EF+
  62285 351 DLRKSLKRKYASSILALKDEFL 372
            69*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.9E-5171213IPR005540KNOX1
PfamPF037902.2E-5172198IPR005540KNOX1
PfamPF037914.0E-5239274IPR005541KNOX2
PROSITE profilePS512138.975351371IPR005539ELK domain
PROSITE profilePS5007110.754371434IPR001356Homeobox domain
SMARTSM003892.9E-8373438IPR001356Homeobox domain
SuperFamilySSF466891.07E-14374438IPR009057Homeodomain-like
CDDcd000861.54E-10374434No hitNo description
Gene3DG3DSA:1.10.10.601.9E-23376436IPR009057Homeodomain-like
PfamPF059202.5E-15391430IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0010094Biological Processspecification of carpel identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MTRPDPSPVL ARRPPPDAPH VALPRTPFAD DEDGDDIDGE GFAFSLPDID ALIAGPLPSL  60
GPDDLTFIAT IDDLDKLPTA TPASSAPPTS PGGMLSSPRS SFPPGAFSFA TSSRAGCPDG  120
AAERAGLAPW VPRWSVDESV HPGRPTGGVP PPAAAARPPP DAQGVLDDER GAMRAAVRAN  180
PRYPKLLDAY FACRRVGADA TSKASLARRR RQLLREATEV SCGTMRAALD ACVRRYGAEL  240
DEFMDNVTDE LTAYAEELGA CFDEVDAACR EAEARVAATA AKKLNALNVS AKTSRPVSTA  300
AKKSVKVEPN AERESDSDTG GSDEDEASAW VRRRRRKAAK ESKIPDTRED DLRKSLKRKY  360
ASSILALKDE FLKKTKKGKL PSSATKTLKE WWLANLLWPY PSEDAKRALM KLAGLNQTQI  420
NNWFINQRKR HWHRLFDRDE AQPISETEAR HMILEKYGNV EAFLEVARAA *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00670PBMTransfer from GRMZM2G087741Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013300.0CP001330.1 Micromonas sp. RCC299 chromosome 11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002504807.10.0knox-like protein
TrEMBLC1EDI80.0C1EDI8_MICCC; Knox-like protein
STRINGXP_002504807.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP545189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.19e-23KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]