PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 62171
Common NameMICPUN_62171
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family C3H
Protein Properties Length: 304aa    MW: 32669.5 Da    PI: 9.247
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
62171genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.1e-06153172526
              --SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
               Cr+f+r G C++ ++C+F+Hg
    62171 153 TCRDFMR-GNCNR-ENCRFSHG 172
              6******.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF502491.52E-1571136IPR012340Nucleic acid-binding, OB-fold
Gene3DG3DSA:2.40.50.1401.2E-1573136IPR012340Nucleic acid-binding, OB-fold
CDDcd044581.50E-1474137No hitNo description
SMARTSM003574.8E-1075138IPR011129Cold shock protein
PfamPF003133.7E-1384137IPR002059Cold-shock protein, DNA-binding
PROSITE patternPS00352086105IPR019844Cold-shock conserved site
SMARTSM003560.0026148173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.666148174IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-4153172IPR000571Zinc finger, CCCH-type
SMARTSM003560.53202227IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.516202228IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MASPQDSPRD NDAPNGDGDD RHDDAPARRS RSRSPADRRE RSRSRSPRGR SRSRSRSPAR  60
GGYGSSPPPR GERKTGVAGR WNPRGFGFIT PDQGGEDLFC HFSSITDGNM LNEGARVEYD  120
ESFDDRKGKP RAERVTGGTQ GEDRGPPPPR DNTCRDFMRG NCNRENCRFS HGDSGGGYGG  180
GRGGGGGYGG GYGGGGGYGG GGGRSDICYD FQKGNCTRQF CKFSHDLGGG GGGGYGGGRD  240
YDRGGARDYD RRGGGYDDRR GGGYDDRGRD SYHPYSRDDD RGGYGGGRDR RDSRGYDDRR  300
GPY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14755RGRSRSRSR
2179186GGRGGGGG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0015760.0CP001576.1 Micromonas sp. RCC299 chromosome 10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002508607.10.0predicted protein
TrEMBLC1FHR40.0C1FHR4_MICCC; Uncharacterized protein
STRINGXP_002508607.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1509222
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]