PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

62153

Common Name

MICPUN_62153

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

HB-other

Protein Properties

Length: 779aa MW: 83753.7 Da PI: 5.7518

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
62153	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.7	5.3e-10	693	753	4	55
-SS--HHHHHHHHHHHH........H.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFe........k.nrypsaeereeLAkklgLterqVkvWFqNrRake 55 R +++ e +e+Le+ F + ++ p++ee++ LA+ +gL+erqV WF N Ra++ 62153 693 RKQHSGEATEVLERWFWdnfypteqRpKPVPTREEKRALATATGLSERQVADWFVNARARK 753 7888889999999999866666664347778999*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	12.568	687	756	IPR001356	Homeobox domain
SMART	SM00389	5.6E-9	689	760	IPR001356	Homeobox domain
CDD	cd00086	4.03E-11	693	757	No hit	No description
SuperFamily	SSF46689	7.27E-13	693	762	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.8E-18	693	760	IPR009057	Homeodomain-like
Pfam	PF05920	1.5E-9	720	752	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 779 aa Download sequence Send to blast
MAGAFPPGSL VDPMSHDDDY GGATVATITF DDHGAFGVEL KASQGRAGWK TSGLDTLLAP 60 SAIPAHGAPF DATAPAVPLA DAHDIVPERY RIRDVTHHAL DDLELFHRAV DGDDDTWDVL 120 LGAFEEHCLE RGHRANANAD LLDARRDDAA ADDHHPDPAD PTPPRRPRAS TSKSTSGDER 180 VRRPEEAEGT TGQMLSVDRR CSDDDGSNGS TNRTTVRQSP SHADLDEAVR RWSVGEGDGD 240 GGNRGSRDGG GWYESLHPAA DADHQTYRNT FTCAFDDDAY PFACATDPST HQATRRIAHA 300 PLEHDDDDDD DASPPRLIAT AGTSAAGHAS HVLRSLIFGK GELRRGKTKT ADRSKKVRRK 360 PAGCGRAKRT RSGFSAKDAA NDDVNGVGVG VARGRLADGD DDDDANEEEE DAAGTFAARN 420 PTRWVASESA AATSDAVDAD VSAAIHAATQ SGAKSGTIAA MTRALSSLRN GIADELVTLS 480 HTEARTVSAA MAADARAGRV NHRGLLFDDA DTAHSSGLSE PGRSIELFVG NSSSAVALRF 540 RECRFRILRQ FNRDAMRCLV AHCGVDAARE WDTGDVVDPR VFNDSEGSVL ERPPRAPLRL 600 DQNFLPPDHQ GAGEETTADR LCRTHSQTLT QLARDAPASL KASSGLLARK QLLLGGSDLG 660 RELRAESSSP RRTKKKVAGS NPTQRSRANL TARKQHSGEA TEVLERWFWD NFYPTEQRPK 720 PVPTREEKRA LATATGLSER QVADWFVNAR ARKWKPRMEQ IMREVCGEVG EEGVEGGA*

Sequence ? help Back to Top

Protein Sequence Length: 779 aa Download sequence Send to blast

MAGAFPPGSL VDPMSHDDDY GGATVATITF DDHGAFGVEL KASQGRAGWK TSGLDTLLAP  60
SAIPAHGAPF DATAPAVPLA DAHDIVPERY RIRDVTHHAL DDLELFHRAV DGDDDTWDVL  120
LGAFEEHCLE RGHRANANAD LLDARRDDAA ADDHHPDPAD PTPPRRPRAS TSKSTSGDER  180
VRRPEEAEGT TGQMLSVDRR CSDDDGSNGS TNRTTVRQSP SHADLDEAVR RWSVGEGDGD  240
GGNRGSRDGG GWYESLHPAA DADHQTYRNT FTCAFDDDAY PFACATDPST HQATRRIAHA  300
PLEHDDDDDD DASPPRLIAT AGTSAAGHAS HVLRSLIFGK GELRRGKTKT ADRSKKVRRK  360
PAGCGRAKRT RSGFSAKDAA NDDVNGVGVG VARGRLADGD DDDDANEEEE DAAGTFAARN  420
PTRWVASESA AATSDAVDAD VSAAIHAATQ SGAKSGTIAA MTRALSSLRN GIADELVTLS  480
HTEARTVSAA MAADARAGRV NHRGLLFDDA DTAHSSGLSE PGRSIELFVG NSSSAVALRF  540
RECRFRILRQ FNRDAMRCLV AHCGVDAARE WDTGDVVDPR VFNDSEGSVL ERPPRAPLRL  600
DQNFLPPDHQ GAGEETTADR LCRTHSQTLT QLARDAPASL KASSGLLARK QLLLGGSDLG  660
RELRAESSSP RRTKKKVAGS NPTQRSRANL TARKQHSGEA TEVLERWFWD NFYPTEQRPK  720
PVPTREEKRA LATATGLSER QVADWFVNAR ARKWKPRMEQ IMREVCGEVG EEGVEGGA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	343	360	RRGKTKTADRSKKVRRKP

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001576	0.0	CP001576.1 Micromonas sp. RCC299 chromosome 10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002508597.1	0.0	predicted protein
TrEMBL	C1FHP5	0.0	C1FHP5_MICCC; Uncharacterized protein
STRING	XP_002508597.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP7222	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27990.1	3e-12	BEL1-like homeodomain 8

Link Out ? help Back to Top
Phytozome	62153
Entrez Gene	8247156

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]