PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

61429

Common Name

MICPUN_61429

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

SBP

Protein Properties

Length: 1037aa MW: 104530 Da PI: 5.4359

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
61429	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	34.4	5.7e-11	599	675	1	76
--SSTT-----TT--HHHHHTT.--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhk.vCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +C v++C + ++ e ++r C+ hs a vvl g+ r Cq C fh ++ fD + ++C +rL + r r k 61429 599 CCLVDDCFTPRKQPSEQNSRMPlTCKEHSGALVVLYGGVASRECQACRTFHPITAFDRDNKTCETRLLRKKLRYRAK 675 599999998888887777776526*******************************************9998887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	5.9E-13	593	662	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	14.238	597	675	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.35E-10	598	677	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.0E-17	600	674	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1037 aa Download sequence Send to blast
MFAPGFSAHA SVESGQAHCG ARAGSSSGGE ERINPFDMPG ENSPPSKKAR RGSPVLPVDA 60 DLDGVLHDQE EDDRQPSPPH PSTGKRVIWR VPETSHTGSC WQIIDGFATP EECRALVADA 120 KQGLADSLRQ PLRRFEDPPL VGVKYRSADA SSLASEALAA LSARAANVTC VGVNKEKDSV 180 MIAHTSARVT TTTRAAVLPG DEKDENADVG KEPGAAEGDG VGAAREGSVD SEGFLLREDH 240 AKDGGVSRWA RLVNVHHDHN RDELRACTVF VYLSDVEPIT GPADDADGTE RRKTPGGGTF 300 FPCVMGDVDP REGDDLRARL ALHGKRGTNV IFHDSRDGGA EEEASEGDAL VAEFGTLSRG 360 GVGVVGVSGG AGAGAEAGAG YDDEGMTETM AECEARYAAV CASGRHPLRG ECPESMRGTI 420 LEGNGVPGLL IRPREGRAVV FWHGEDAGSC PEAWHAPTCV EEGSSDKWLV TFFKVPLGAK 480 PKLKQATEET IMPGGLDPYA AVMAASRGTL DSVNMVNIHG TQMIQPVRKN DDATTAAAME 540 KIGRSPGVEV GNLPGSELPA QLGPGSEPAR AQGNALTGLP GLSNNVPGKS LSQWKQKWCC 600 LVDDCFTPRK QPSEQNSRMP LTCKEHSGAL VVLYGGVASR ECQACRTFHP ITAFDRDNKT 660 CETRLLRKKL RYRAKTMQRR GSMQPENLTY PAGAHPYPAG AYPYPAAVPG HVGVQPGAQF 720 APGAHPLLIP DANQTALLLA AASQQRNHQQ QQLNSMLPFG GPPGGPASSG HPGATGAGAQ 780 PSIDALGALG ATGLDPWNLA QYAALVQAGA GSGSASASAQ APAGLTGTGL ASAGQDQTQA 840 YLAALQQANS LSGLGGGLGG GLGGLGGLGG LGGLGGLGGL GGLGGLGGLG GLGGLGGLGG 900 LGGLGGLGGG FGLGGVGGGV GGGVGGGLGG LGAVGGLGGL GAMGGLGGLG GLGGLGDLGD 960 SAHLLAQLRQ QVGDNATAAA SAAAMNQAGA SYPGVSSELA EILRNVDPQA LPAVLAQLQQ 1020 ATSGLNGGTD TGGGGQ*

Sequence ? help Back to Top

Protein Sequence Length: 1037 aa Download sequence Send to blast

MFAPGFSAHA SVESGQAHCG ARAGSSSGGE ERINPFDMPG ENSPPSKKAR RGSPVLPVDA  60
DLDGVLHDQE EDDRQPSPPH PSTGKRVIWR VPETSHTGSC WQIIDGFATP EECRALVADA  120
KQGLADSLRQ PLRRFEDPPL VGVKYRSADA SSLASEALAA LSARAANVTC VGVNKEKDSV  180
MIAHTSARVT TTTRAAVLPG DEKDENADVG KEPGAAEGDG VGAAREGSVD SEGFLLREDH  240
AKDGGVSRWA RLVNVHHDHN RDELRACTVF VYLSDVEPIT GPADDADGTE RRKTPGGGTF  300
FPCVMGDVDP REGDDLRARL ALHGKRGTNV IFHDSRDGGA EEEASEGDAL VAEFGTLSRG  360
GVGVVGVSGG AGAGAEAGAG YDDEGMTETM AECEARYAAV CASGRHPLRG ECPESMRGTI  420
LEGNGVPGLL IRPREGRAVV FWHGEDAGSC PEAWHAPTCV EEGSSDKWLV TFFKVPLGAK  480
PKLKQATEET IMPGGLDPYA AVMAASRGTL DSVNMVNIHG TQMIQPVRKN DDATTAAAME  540
KIGRSPGVEV GNLPGSELPA QLGPGSEPAR AQGNALTGLP GLSNNVPGKS LSQWKQKWCC  600
LVDDCFTPRK QPSEQNSRMP LTCKEHSGAL VVLYGGVASR ECQACRTFHP ITAFDRDNKT  660
CETRLLRKKL RYRAKTMQRR GSMQPENLTY PAGAHPYPAG AYPYPAAVPG HVGVQPGAQF  720
APGAHPLLIP DANQTALLLA AASQQRNHQQ QQLNSMLPFG GPPGGPASSG HPGATGAGAQ  780
PSIDALGALG ATGLDPWNLA QYAALVQAGA GSGSASASAQ APAGLTGTGL ASAGQDQTQA  840
YLAALQQANS LSGLGGGLGG GLGGLGGLGG LGGLGGLGGL GGLGGLGGLG GLGGLGGLGG  900
LGGLGGLGGG FGLGGVGGGV GGGVGGGLGG LGAVGGLGGL GAMGGLGGLG GLGGLGDLGD  960
SAHLLAQLRQ QVGDNATAAA SAAAMNQAGA SYPGVSSELA EILRNVDPQA LPAVLAQLQQ  1020
ATSGLNGGTD TGGGGQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	666	672	RKKLRYR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001329	0.0	CP001329.1 Micromonas sp. RCC299 chromosome 9, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002504650.1	0.0	predicted protein
TrEMBL	C1ECI4	0.0	C1ECI4_MICCC; Uncharacterized protein
STRING	XP_002504650.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP10694	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	3e-07	squamosa promoter-binding protein-like 12

Link Out ? help Back to Top
Phytozome	61429
Entrez Gene	8246515

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]