PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 61072
Common NameMICPUN_61072
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family MYB_related
Protein Properties Length: 1227aa    MW: 129565 Da    PI: 9.5879
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
61072genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.3e-08795836346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE + + + ++ +G++ +k+Ia+ +  gRt  +c+ ++++
            61072 795 PWTAEEKKTFHEKFASFGKN-FKRIAAFID-GRTTADCVVYYYQ 836
                      8*****************99.*********.********99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.103.8E-6120151IPR001878Zinc finger, CCHC-type
SuperFamilySSF577564.65E-12140185IPR001878Zinc finger, CCHC-type
PfamPF000982.2E-6144161IPR001878Zinc finger, CCHC-type
SMARTSM003432.4E-5145161IPR001878Zinc finger, CCHC-type
PROSITE profilePS5015810.411146161IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.104.3E-14152183IPR001878Zinc finger, CCHC-type
PfamPF000981.0E-6166182IPR001878Zinc finger, CCHC-type
SMARTSM003434.9E-5167183IPR001878Zinc finger, CCHC-type
PROSITE profilePS5015810.164168182IPR001878Zinc finger, CCHC-type
SuperFamilySSF466891.42E-12781840IPR009057Homeodomain-like
PROSITE profilePS5129315.658791842IPR017884SANT domain
SMARTSM007178.8E-7792840IPR001005SANT/Myb domain
PfamPF002493.9E-6795836IPR001005SANT/Myb domain
CDDcd001672.85E-6795836No hitNo description
Gene3DG3DSA:1.10.10.608.3E-6795839IPR009057Homeodomain-like
SuperFamilySSF466892.89E-89521009IPR009057Homeodomain-like
PROSITE profilePS5129311.1959581009IPR017884SANT domain
SMARTSM007171.2E-49591007IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.600.0019591006IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1227 aa     Download sequence    Send to blast
MYKRDRGGFG PPKDRDDRYR RDDGRDGPDG GGAPGGWDRG RGGAPGDRDR GDRGWGDRGG  60
HGGPAPHRPS MMSGSHPNAR PSLLTSPTGN QRPRMHMPMG RANDQFYQSS NHFNDDFDEE  120
GEIAAAPPQP AGPPPMTHPR MQGKTCHRCG GVGHFARDCP SSRDNRTCRV CGEVGHIARD  180
CPMNRQGGPP PVQKPSDRDW DTPRESNRDA ARNRERGYNE PDRAPPVPIR KSFSHERWGG  240
GGATREDGEL TAPSYAKNAQ EGPHVSRAAA PVDVDRPPLS VPPRGGGVET DGGGGYADRG  300
EVAVTHRGES VNLGGLTRFS SAPPGPTSLD DFGAAGAAAS TPTTHAAKKG GWGGGLGAKA  360
SASKGAWGKG LARSKSALPG VGGGGDDSNQ PPTPADGAKG VSSFAVPAPS PSFAFPDDAS  420
NPPLPGGPPP PGQEIRQDLR TPPPDWEDPT AKAARLAAFR ADAAAKKELV DDLAKKKGDI  480
MTAMEETDAE IEKLELEIAE LDERDVNDKE QAEEQARHQE ARLDRELDNL KRSVERAERN  540
AEKAAVEAEE AKTKAEKLRK KAGLNKAGEI DPAAAAEAAA RSRRCAEMIQ EMVTGDEPRA  600
DVVARIVRAN EQVANKSHDG LKHTCGLPLA NELPRVSVEE IAARNFATEN DPSRAGVRDA  660
VKDVLRRRRA AVADKQLTLA VTYLKRREKW RVRMVAADRT RLEKMYGVKP GGKLPTPGSR  720
GSGRLNSSMA GVAKSDYEEM QILQQLQRVE ALKSIIKLPP QVLDPEERRL AAFKSRNALV  780
EDPVAEVDAL KLVRPWTAEE KKTFHEKFAS FGKNFKRIAA FIDGRTTADC VVYYYQRQKT  840
DDGFKGRRRA LAKKKRAYAE AKRMTGGAWS NNAAGQAAQA AQQRAQREAQ QRAIEEQQEA  900
ERKARAEKRK QARAGTGKTP KSAKKAAKPE AEAEGGDEGD EESNKPVSRS ASEADLSTKG  960
QAWTANEKKS FLAALAEHGK DFKAIAAAVG SKSQTAAKAF FGKHKKSLSL EKIVDDHAKA  1020
KAKEEKKSAA AKKKAPAKDE PAEKPETPAP GGAQDHAAHA AAGAQLAAAH AAAAAAAMAA  1080
YQQAVAAGAA ATDPMLQAML AGQMPTSGVA PDPAAMMAMF QQAMAAAAGG AGAGAPAVKA  1140
EETAAAAAAP SFFPSAETGA KRARDDDDDG DKEKASKAAK KEDGASAQAS AGPPLSTAAA  1200
AAAAQAAKEG ELPTASLKWG EGGGED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C9e-15751842292NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D9e-15751842292NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013290.0CP001329.1 Micromonas sp. RCC299 chromosome 9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002504154.10.0predicted protein
TrEMBLC1EDB60.0C1EDB6_MICCC; Uncharacterized protein
STRINGXP_002504154.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP28831010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.12e-19MYB family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]